CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0364500

Gene name
Homology with Arabidopsis Similar to At5g49060: DNAJ heat shock N-terminal domain-containing protein (HF=1e-9)

Module size 6 genes

NF 0.31

%ile 33.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.96 Os05g0364500 AK103527.1 - Heat shock protein DnaJ family protein 1e-9 At5g49060 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.50 68.0 0.96 Os04g0490700 AK072099.1 - Conserved hypothetical protein 5e+0 At4g28485 unknown protein O.I. H.G. S.X.
0.44 58.1 0.96 Os02g0150100 AK100093.1 - The start codon is not identified. 6e-15 At5g51280 DEAD-box protein abstrakt, putative O.I. H.G. S.X.
0.33 38.8 0.96 Os03g0798200 AK071454.1 - Zn-finger, RING domain containing protein 4e-9 At1g06770 DRIP1 (DREB2A-INTERACTING PROTEIN 1) O.I. H.G. S.X.
0.23 21.2 0.96 Os09g0514900 AK102371.1 - Protein of unknown function DUF654 family protein 2e-2 At2g46900 - O.I. H.G. S.X.
0.17 12.6 0.96 Os07g0660200 AK067331.1 - Chromodomain-helicase-DNA-binding protein,CHD-1-related 6e-28 At2g13370 CHR5 (chromatin remodeling 5) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
64.9 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.8 98.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.024 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g49060, orthologous to the query gene, Os05g0364500

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.35 41.6 At5g49060 834965 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. H.G. S.X.
0.75 86.9 At4g26980 828806 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. H.G. S.X.
0.57 73.8 At5g15710 831425 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.50 65.3 At3g07930 819984 HhH-GPD base excision DNA repair family protein F:unknown;P:base-excision repair;C:unknown;MPO O.I. H.G. S.X.
0.33 38.1 At1g49350 841358 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process;C:cellular_component unknown;BOMFP O.I. H.G. S.X.
0.25 22.6 At5g65540 836680 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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