CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0352700

Gene name
Homology with Arabidopsis Similar to At5g14930: SAG101 (SENESCENCE-ASSOCIATED GENE 101) (HF=7e+0)

Module size 7 genes

NF 0.36

%ile 40.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.96 Os05g0352700 CA759249 - Zn-finger, RING domain containing protein 7e+0 At5g14930 SAG101 (SENESCENCE-ASSOCIATED GENE 101) O.I. H.G. S.X.
0.43 55.4 0.96 Os12g0294100 AK111535.1 - WD40-like domain containing protein 1e-3 At2g47790 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.42 53.9 0.96 Os07g0564000 BI805536 - Conserved hypothetical protein 9e-1 At4g02370 unknown protein O.I. H.G. S.X.
0.40 51.1 0.96 Os01g0957900 AK068334.1 - ARM repeat fold domain containing protein 5e-1 At2g28050 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.25 24.1 0.95 Os07g0627400 NM_193046.1 - Conserved hypothetical protein 4e-1 At4g35390 AGF1 (AT-hook protein of GA feedback 1) O.I. H.G. S.X.
0.25 24.1 0.97 Os02g0817800 AF242298.1 - Telomere binding protein-1 2e-8 At3g46590 TRFL1 (TRF-LIKE 1) O.I. H.G. S.X.
0.20 16.5 0.96 Os12g0112300 CB685051 - - 3e-20 At5g05310 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.7 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM159206 Inflorescence (P6, 22 - 30 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
11.2 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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