CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0299100

Gene name
Homology with Arabidopsis Similar to At3g25070: RIN4 (RPM1 INTERACTING PROTEIN 4) (HF=4e-3)

Module size 10 genes

NF 0.37

%ile 42.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 0.99 Os05g0299100 9633.m02074 - Hypothetical protein 4e-3 At3g25070 RIN4 (RPM1 INTERACTING PROTEIN 4) O.I. H.G. S.X.
0.56 76.3 0.99 Os01g0910350 9629.m06774 - - 3e+0 At2g27410 unknown protein O.I. H.G. S.X.
0.50 68.0 0.99 Os01g0880900 AK069671.1 - - 4e+0 At3g52520 unknown protein O.I. H.G. S.X.
0.46 60.9 1.00 Os11g0434850 9639.m02187 - - 6e+0 At4g04870 CLS (CARDIOLIPIN SYNTHASE) O.I. H.G. S.X.
0.44 58.1 0.99 Os04g0318700 9638.m00476 - - 1e+0 At1g02405 proline-rich family protein O.I. H.G. S.X.
0.36 44.0 0.99 Os08g0431900 AY345220.1 - Transcription factor MADS23 6e-6 At3g57230 AGL16 (AGAMOUS-LIKE 16) O.I. H.G. S.X.
0.33 38.8 0.99 Os11g0109600 9639.m00085 - Uncharacterized Cys-rich domain containing protein 2e-3 At3g62890 binding O.I. H.G. S.X.
0.31 34.5 0.99 Os01g0854200 NM_190657.1 - - 5e-1 At1g68140 - O.I. H.G. S.X.
0.30 32.7 0.99 Os06g0266000 AK105495.1 - Conserved hypothetical protein 1e+0 At4g24590 unknown protein O.I. H.G. S.X.
0.21 17.9 0.99 Os06g0512801 9634.m03020 - - 2e+0 At3g15450 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
57.0 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.8 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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