Co-expression analysis

Gene ID Os05g0295300
Gene name
Homology with ArabidopsisSimilar to At3g24280: SMAP2 (small acidic protein 2) (HF=2e+0)
Module size 15 genes
NF 0.47
%ile 60.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7692.20.96Os05g0295300AK059261.1-Acetyl-coenzyme A carboxylase (EC 6.4.1.2)2e+0At3g24280SMAP2 (small acidic protein 2)O.I.H.G.S.X.
0.5676.30.97Os06g0568000AK071892.1-Nonaspanin (TM9SF) family protein4e-107At3g13772endomembrane protein 70, putativeO.I.H.G.S.X.
0.5676.30.96Os04g0555500AK108782.1-The start codon is not identified.4e-3At2g45540WD-40 repeat family protein / beige-relatedO.I.H.G.S.X.
0.5471.90.97Os03g0227000AK068454.1-Coatomer gamma subunit (Gamma-coat protein)(Gamma-COP)1e-25At4g34450coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putativeO.I.H.G.S.X.
0.5371.30.96Os07g0564700AK059018.1-Hypothetical protein5e-18At3g43300ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7)O.I.H.G.S.X.
0.5068.00.98Os01g0911200AK101333.1-Ribophorin II family protein1e-6At4g21150HAP6 (HAPLESS 6)O.I.H.G.S.X.
0.4863.70.98Os05g0230600AK070398.1-WD40-like domain containing protein1e-7At5g11560catalyticO.I.H.G.S.X.
0.4660.90.98Os07g0657200AK072927.1-WD40-like domain containing protein3e-8At3g63460WD-40 repeat family proteinO.I.H.G.S.X.
0.4558.80.97Os06g0143900AK111584.1-Coatomer protein complex, beta prime6e-99At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.4051.10.97Os02g0722300AK064958.1-Nonaspanin (TM9SF) family protein6e-21At4g12650-O.I.H.G.S.X.
0.3644.00.98Os03g0694900AK121157.1-Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNAligase) (ValRS)2e-28At1g14610TWN2 (TWIN 2)O.I.H.G.S.X.
0.3644.00.98Os02g0537900AK070310.1-Vacuolar-type H+-translocating inorganicpyrophosphatase (EC 3.6.1.1)5e-87At1g16780vacuolar-type H+-translocating inorganic pyrophosphatase, putativeO.I.H.G.S.X.
0.3236.30.97Os08g0554900AK072840.1-Nonaspanin (TM9SF) family protein2e-39At5g10840endomembrane protein 70, putativeO.I.H.G.S.X.
0.3032.70.97Os12g0104800AK058259.1--2e-138At3g08530clathrin heavy chain, putativeO.I.H.G.S.X.
0.2524.10.97Os06g0538000AK069949.1-Chaperonin Cpn60/TCP-1 family protein5e-83At5g26360chaperonin, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.299.2GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
19.499.0GSM195228EmbryoGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
10.698.1GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
6.897.3GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.497.2GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.097.0GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.997.0GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.596.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.596.8GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.496.8GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1181GO:0006438The process of coupling valine to valyl-tRNA, catalyzed by valyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.Link to AmiGO
0.0491GO:0015992The directed movement of protons (hydrogen ions) into, out of, within or between cells.Link to AmiGO
0.0341GO:0006418The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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