Co-expression analysis

Gene ID Os05g0292600
Gene name
Homology with ArabidopsisSimilar to Atcg00780: - (HF=5e-68)
Module size 6 genes
NF 0.37
%ile 43.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.60.91Os05g0292600AK071967.1-Chloroplast 50S ribosomal protein L145e-68Atcg00780-O.I.H.G.S.X.
0.6787.20.94Os10g0356366CR288737--3e-30Atcg00510-O.I.H.G.S.X.
0.6079.70.91Os01g0789400NM_195997.1-Alpha subunit of RNA polymerase2e-50Atcg00740-O.I.H.G.S.X.
0.2931.10.91Os10g0527100BI795990-Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV)2e+0At5g15850COL1 (constans-like 1)O.I.H.G.S.X.
0.2321.20.94Os07g0567400AK068245.1--1e-4At5g45040cytochrome c6 (ATC6)O.I.H.G.S.X.
0.138.20.91Os02g0199300AK064726.1-Peptidylprolyl isomerase, FKBP-type domaincontaining protein2e-6At4g26555immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
37.099.8GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
35.399.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.698.7GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.098.6GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.098.5GSM377079Genomic DNA - 45 day old leaf sample - mutant g6686GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.698.4GSM377083Genomic DNA - 45 day old leaf sample - mutant g6989GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.198.3GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.098.3GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0871GO:0006818The directed movement of hydrogen (H2 or H+), into, out of, within or between cells.Link to AmiGO
0.0631GO:0015992The directed movement of protons (hydrogen ions) into, out of, within or between cells.Link to AmiGO
0.0241GO:0006457The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.128896.1.S1_s_at, orthologous to the query gene, Os05g0292600

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6483.6TaAffx.128896.1.S1_s_atAtcg00780--2e-49Atcg00780-O.I.H.G.S.X.
0.5979.8Ta.13691.1.A1_atAtcg00780--2e+0At5g62950catalytic/ nucleotide bindingO.I.H.G.S.X.
0.4464.5TaAffx.79737.1.S1_atAtcg00780--2e-4At2g01440ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid bindingO.I.H.G.S.X.
0.3956.1TaAffx.92927.1.A1_atAtcg00780--7e+0At5g22950VPS24.1O.I.H.G.S.X.
0.3651.9Ta.18710.1.S1_s_atAtcg00780--4e-45At4g17370oxidoreductase family proteinO.I.H.G.S.X.
0.3651.9Ta.25251.1.S1_atAtcg00780--2e-20At5g13640ATPDATO.I.H.G.S.X.
0.3142.7Ta.6079.1.A1_x_atAtcg00780--9e-3At1g29880glycyl-tRNA synthetase / glycine--tRNA ligaseO.I.H.G.S.X.
0.3142.7Ta.22473.1.S1_s_atAtcg00780--5e+0At3g15090oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.3142.7Ta.6049.1.S1_atAtcg00780--4e-38At5g49910CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)O.I.H.G.S.X.
0.2735.6Ta.28343.1.A1_atAtcg00780--1e-3At5g47110lil3 protein, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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