Co-expression analysis

Gene ID	Os05g0292600
Gene name
Homology with Arabidopsis	Similar to Atcg00780: - (HF=5e-68)
Module size	6 genes
NF	0.37
%ile	43.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.6	0.91	Os05g0292600	AK071967.1	-	Chloroplast 50S ribosomal protein L14	5e-68	Atcg00780	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.94	Os10g0356366	CR288737	-	-	3e-30	Atcg00510	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	0.91	Os01g0789400	NM_195997.1	-	Alpha subunit of RNA polymerase	2e-50	Atcg00740	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	0.91	Os10g0527100	BI795990	-	Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV)	2e+0	At5g15850	COL1 (constans-like 1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	21.2	0.94	Os07g0567400	AK068245.1	-	-	1e-4	At5g45040	cytochrome c6 (ATC6)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	8.2	0.91	Os02g0199300	AK064726.1	-	Peptidylprolyl isomerase, FKBP-type domaincontaining protein	2e-6	At4g26555	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
37.0	99.8	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
35.3	99.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.6	98.7	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.0	98.6	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0	98.5	GSM377079	Genomic DNA - 45 day old leaf sample - mutant g6686	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6	98.4	GSM377083	Genomic DNA - 45 day old leaf sample - mutant g6989	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9	98.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9	98.3	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO
0.087	1	GO:0006818	The directed movement of hydrogen (H2 or H+), into, out of, within or between cells.
0.063	1	GO:0015992	The directed movement of protons (hydrogen ions) into, out of, within or between cells.
0.024	1	GO:0006457	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

A co-expression module including the soybean gene, Gma.10842.1.S1_s_at, orthologous to the query gene, Os05g0292600

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	92.5	Gma.10842.1.S1_s_at	Atcg00780	-	-	5e-107	Atcg00790	-	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.17737.1.S1_at	Atcg00780	-	-	0	Atcg01310	-	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.17706.1.A1_at	Atcg00780	-	-	8e-64	Atcg00500	-	O.I.	H.G.	S.X.	Please select
0.10	13.0	Gma.15843.1.S1_at	Atcg00780	-	-	9e-5	At5g17610	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	4.5	Gma.8271.1.A1_s_at	Atcg00780	-	-	7e-15	At4g38350	hedgehog receptor	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.10751.3.S1_x_at	Atcg00780	-	-	8e-24	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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