Co-expression analysis

Gene ID Os05g0292600
Gene name
Homology with ArabidopsisSimilar to Atcg00780: - (HF=5e-68)
Module size 6 genes
NF 0.37
%ile 43.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.60.91Os05g0292600AK071967.1-Chloroplast 50S ribosomal protein L145e-68Atcg00780-O.I.H.G.S.X.
0.6787.20.94Os10g0356366CR288737--3e-30Atcg00510-O.I.H.G.S.X.
0.6079.70.91Os01g0789400NM_195997.1-Alpha subunit of RNA polymerase2e-50Atcg00740-O.I.H.G.S.X.
0.2931.10.91Os10g0527100BI795990-Chloroplast ATP synthase a chain precursor (EC3.6.3.14) (ATPase subunit IV)2e+0At5g15850COL1 (constans-like 1)O.I.H.G.S.X.
0.2321.20.94Os07g0567400AK068245.1--1e-4At5g45040cytochrome c6 (ATC6)O.I.H.G.S.X.
0.138.20.91Os02g0199300AK064726.1-Peptidylprolyl isomerase, FKBP-type domaincontaining protein2e-6At4g26555immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
37.099.8GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
35.399.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.698.7GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.098.6GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.098.5GSM377079Genomic DNA - 45 day old leaf sample - mutant g6686GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.698.4GSM377083Genomic DNA - 45 day old leaf sample - mutant g6989GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.198.3GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.098.3GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0871GO:0006818The directed movement of hydrogen (H2 or H+), into, out of, within or between cells.Link to AmiGO
0.0631GO:0015992The directed movement of protons (hydrogen ions) into, out of, within or between cells.Link to AmiGO
0.0241GO:0006457The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, Atcg00780, orthologous to the query gene, Os05g0292600

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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