CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0276500

Gene name
Homology with Arabidopsis Similar to At2g39700: ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) (HF=5e-1)

Module size 6 genes

NF 0.67

%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.91 Os05g0276500 U30479.1 - Expansin Os-EXPA3 5e-1 At2g39700 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) O.I. H.G. S.X.
0.91 98.9 0.93 Os07g0630400 AK060320.1 - Ribonuclease T2 family protein 2e+0 At3g22580 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.73 91.1 0.95 Os08g0477500 AU033142 - S.tuberosum patatin (Fragment) 2e+0 At1g28280 VQ motif-containing protein O.I. H.G. S.X.
0.67 87.2 0.92 Os02g0157600 9630.m00558 - Rhodanese-like domain containing protein 6e+0 At5g66190 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) O.I. H.G. S.X.
0.60 79.7 0.94 Os07g0104500 AK108824.1 - Haem peroxidase, plant/fungal/bacterial familyprotein 2e-1 At2g20080 unknown protein O.I. H.G. S.X.
0.48 63.7 0.91 Os02g0512000 AK108786.1 - Auxin responsive SAUR protein family protein 2e-1 At5g33390 glycine-rich protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
55.5 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.1 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.6 99.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.048 1 GO:0009734 The series of molecular signals generated in response to detection of auxin.
0.048 1 GO:0050896 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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