CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0273201

Gene name
Homology with Arabidopsis Similar to At2g46150: - (HF=4e+0)

Module size 7 genes

NF 0.50

%ile 66.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.99 Os05g0273201 9633.m01723 - - 4e+0 At2g46150 - O.I. H.G. S.X.
0.67 87.2 0.99 Os06g0365200 AK069849.1 - Conserved hypothetical protein 4e-1 At5g06790 unknown protein O.I. H.G. S.X.
0.50 68.0 0.99 Os01g0274000 9635.m01900 - - 1e-1 At1g01350 nucleic acid binding / protein binding / zinc ion binding O.I. H.G. S.X.
0.50 68.0 0.99 Os02g0487200 9630.m02721 - - 3e-1 At4g33740 unknown protein O.I. H.G. S.X.
0.47 62.3 1.00 Os05g0283600 AK106958.1 - The start codon is not identified. 6e+0 At5g49015 Expressed protein O.I. H.G. S.X.
0.39 48.3 0.99 Os03g0643100 AK106587.1 - Conserved hypothetical protein 7e-1 At5g54940 eukaryotic translation initiation factor SUI1, putative O.I. H.G. S.X.
0.31 34.5 0.99 Os01g0502600 9629.m02960 - - 2e+0 At2g34070 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.9 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.3 98.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.5 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage