CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0269000

Gene name
Homology with Arabidopsis Similar to At4g39890: AtRABH1c (Arabidopsis Rab GTPase homolog H1c) (HF=3e-2)

Module size 8 genes

NF 0.42

%ile 52.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.35 41.7 0.97 Os05g0269000 CB666416 - Hypothetical protein 3e-2 At4g39890 AtRABH1c (Arabidopsis Rab GTPase homolog H1c) O.I. H.G. S.X.
0.63 82.7 0.97 Os09g0371400 9637.m01753 - - 2e-4 At5g10190 transporter-related O.I. H.G. S.X.
0.61 81.2 0.98 Os08g0515100 NM_188989.1 - Sulfotransferase family protein 2e-3 At3g45080 sulfotransferase family protein O.I. H.G. S.X.
0.61 81.2 0.98 Os12g0448100 9640.m02506 - - 1e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.53 71.3 0.98 Os04g0422700 AK111485.1 - Conserved hypothetical protein 5e-1 At2g11005 glycine-rich protein O.I. H.G. S.X.
0.50 68.0 0.98 Os10g0404600 9638.m02259 - - 4e+0 At5g28410 unknown protein O.I. H.G. S.X.
0.50 68.0 0.98 Os05g0225100 AK109834.1 - Conserved hypothetical protein 2e-1 At1g02065 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8) O.I. H.G. S.X.
0.20 16.5 0.97 Os02g0734700 9630.m04916 - Conserved hypothetical protein 1e+0 At1g17520 DNA-binding protein, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.5 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.2 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.4 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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