CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0258400

Gene name
Homology with Arabidopsis Similar to At1g53430: leucine-rich repeat family protein / protein kinase family protein (HF=2e-11)

Module size 23 genes

NF 0.56

%ile 76.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.79 93.6 0.84 Os05g0258400 9633.m01517 - Protein kinase domain containing protein 2e-11 At1g53430 leucine-rich repeat family protein / protein kinase family protein O.I. H.G. S.X.
0.68 87.5 0.88 Os05g0596500 AK070817.1 - Zn-finger, RING domain containing protein 7e-1 At5g63480 unknown protein O.I. H.G. S.X.
0.66 83.9 0.88 Os01g0678800 AK062840.1 - Heavy metal transport/detoxification proteindomain containing protein 3e-1 At1g20220 nucleic acid binding O.I. H.G. S.X.
0.66 83.9 0.84 Os09g0447500 AK110565.1 - Cytochrome P450 family protein 6e-2 At1g13110 CYP71B7 O.I. H.G. S.X.
0.65 83.8 0.88 Os08g0108700 9636.m00070 - Conserved hypothetical protein 9e-2 At3g21260 glycolipid transfer protein-related O.I. H.G. S.X.
0.65 83.8 0.91 Os09g0280500 AK106988.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 7e-2 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) O.I. H.G. S.X.
0.65 83.8 0.88 Os07g0421300 AK121014.1 - Glycoside hydrolase, family 31 protein 7e-15 At3g23640 HGL1 (heteroglycan glucosidase 1) O.I. H.G. S.X.
0.64 83.4 0.87 Os03g0216700 AK101556.1 - Multi antimicrobial extrusion protein MatE familyprotein 2e-2 At5g65160 tetratricopeptide repeat (TPR)-containing protein O.I. H.G. S.X.
0.60 79.7 0.88 Os12g0183200 9640.m00762 - 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)(3'(2'),5- bisphosphonucleoside 3'(2')-phosphohydrolase)(DPNPase) 3e-2 At5g63990 3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative O.I. H.G. S.X.
0.58 77.0 0.88 Os12g0639200 AK122160.1 - AAA ATPase, central region domain containingprotein 4e-3 At4g05380 AAA-type ATPase family protein O.I. H.G. S.X.
0.57 77.0 0.88 Os07g0193000 9635.m00915 - HIPL1 protein precursor 3e-1 At5g62630 HIPL2 (HIPL2 PROTEIN PRECURSOR) O.I. H.G. S.X.
0.55 73.7 0.88 Os02g0820800 9630.m05730 - Protein of unknown function DUF296 domaincontaining protein 3e-2 At4g14465 DNA-binding protein-related O.I. H.G. S.X.
0.55 73.7 0.91 Os01g0218100 AK068593.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 1e+0 At5g24890 unknown protein O.I. H.G. S.X.
0.55 73.7 0.91 Os06g0692100 AK110293.1 - Protein kinase domain containing protein 1e-1 At1g48480 RKL1 O.I. H.G. S.X.
0.51 68.7 0.88 Os02g0108800 AK099951.1 - Conserved hypothetical protein 5e-2 At1g04555 unknown protein O.I. H.G. S.X.
0.50 68.0 0.88 Os10g0323500 AK071372.1 - Beta-glucosidase 1e-6 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) O.I. H.G. S.X.
0.47 62.3 0.86 Os09g0293500 9637.m00942 - BRASSINOSTEROID INSENSITIVE 1 precursor (EC2.7.1.37) (AtBRI1) (Brassinosteroid LRR receptor kinase) 9e-15 At3g13380 BRL3 (BRI1-LIKE 3) O.I. H.G. S.X.
0.46 60.9 0.89 Os10g0390600 AK107029.1 - 1-aminocyclopropane-1-carboxylate synthase familyprotein 4e-7 At1g72330 ALAAT2 (ALANINE AMINOTRANSFERASE 2) O.I. H.G. S.X.
0.44 58.1 0.90 Os08g0477500 AU033142 - S.tuberosum patatin (Fragment) 2e+0 At1g28280 VQ motif-containing protein O.I. H.G. S.X.
0.43 55.4 0.90 Os01g0652300 AK063136.1 - Hypothetical protein 5e+0 At1g30475 - O.I. H.G. S.X.
0.39 48.3 0.88 Os05g0489900 AK070533.1 - Calcium/calmodulin-dependent protein kinase 2e-5 At4g09570 CPK4 O.I. H.G. S.X.
0.39 48.3 0.88 Os03g0320100 CF280794 - Alpha-L-arabinofuranosidase, C-terminal domaincontaining protein 1e-15 At3g10740 ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1) O.I. H.G. S.X.
0.36 44.0 0.90 Os02g0745100 AK069842.1 - NOD26-like membrane integral protein ZmNIP2-1 2e-1 At4g17340 TIP2 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.79	93.6	0.84	Os05g0258400	9633.m01517	-	Protein kinase domain containing protein	2e-11	At1g53430	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.
0.68	87.5	0.88	Os05g0596500	AK070817.1	-	Zn-finger, RING domain containing protein	7e-1	At5g63480	unknown protein	O.I.	H.G.	S.X.
0.66	83.9	0.88	Os01g0678800	AK062840.1	-	Heavy metal transport/detoxification proteindomain containing protein	3e-1	At1g20220	nucleic acid binding	O.I.	H.G.	S.X.
0.66	83.9	0.84	Os09g0447500	AK110565.1	-	Cytochrome P450 family protein	6e-2	At1g13110	CYP71B7	O.I.	H.G.	S.X.
0.65	83.8	0.88	Os08g0108700	9636.m00070	-	Conserved hypothetical protein	9e-2	At3g21260	glycolipid transfer protein-related	O.I.	H.G.	S.X.
0.65	83.8	0.91	Os09g0280500	AK106988.1	-	Basic-leucine zipper (bZIP) transcription factordomain containing protein	7e-2	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	O.I.	H.G.	S.X.
0.65	83.8	0.88	Os07g0421300	AK121014.1	-	Glycoside hydrolase, family 31 protein	7e-15	At3g23640	HGL1 (heteroglycan glucosidase 1)	O.I.	H.G.	S.X.
0.64	83.4	0.87	Os03g0216700	AK101556.1	-	Multi antimicrobial extrusion protein MatE familyprotein	2e-2	At5g65160	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.
0.60	79.7	0.88	Os12g0183200	9640.m00762	-	3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)(3'(2'),5- bisphosphonucleoside 3'(2')-phosphohydrolase)(DPNPase)	3e-2	At5g63990	3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative	O.I.	H.G.	S.X.
0.58	77.0	0.88	Os12g0639200	AK122160.1	-	AAA ATPase, central region domain containingprotein	4e-3	At4g05380	AAA-type ATPase family protein	O.I.	H.G.	S.X.
0.57	77.0	0.88	Os07g0193000	9635.m00915	-	HIPL1 protein precursor	3e-1	At5g62630	HIPL2 (HIPL2 PROTEIN PRECURSOR)	O.I.	H.G.	S.X.
0.55	73.7	0.88	Os02g0820800	9630.m05730	-	Protein of unknown function DUF296 domaincontaining protein	3e-2	At4g14465	DNA-binding protein-related	O.I.	H.G.	S.X.
0.55	73.7	0.91	Os01g0218100	AK068593.1	-	Basic helix-loop-helix dimerisation region bHLHdomain containing protein	1e+0	At5g24890	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	0.91	Os06g0692100	AK110293.1	-	Protein kinase domain containing protein	1e-1	At1g48480	RKL1	O.I.	H.G.	S.X.
0.51	68.7	0.88	Os02g0108800	AK099951.1	-	Conserved hypothetical protein	5e-2	At1g04555	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.88	Os10g0323500	AK071372.1	-	Beta-glucosidase	1e-6	At1g26560	BGLU40 (BETA GLUCOSIDASE 40)	O.I.	H.G.	S.X.
0.47	62.3	0.86	Os09g0293500	9637.m00942	-	BRASSINOSTEROID INSENSITIVE 1 precursor (EC2.7.1.37) (AtBRI1) (Brassinosteroid LRR receptor kinase)	9e-15	At3g13380	BRL3 (BRI1-LIKE 3)	O.I.	H.G.	S.X.
0.46	60.9	0.89	Os10g0390600	AK107029.1	-	1-aminocyclopropane-1-carboxylate synthase familyprotein	4e-7	At1g72330	ALAAT2 (ALANINE AMINOTRANSFERASE 2)	O.I.	H.G.	S.X.
0.44	58.1	0.90	Os08g0477500	AU033142	-	S.tuberosum patatin (Fragment)	2e+0	At1g28280	VQ motif-containing protein	O.I.	H.G.	S.X.
0.43	55.4	0.90	Os01g0652300	AK063136.1	-	Hypothetical protein	5e+0	At1g30475	-	O.I.	H.G.	S.X.
0.39	48.3	0.88	Os05g0489900	AK070533.1	-	Calcium/calmodulin-dependent protein kinase	2e-5	At4g09570	CPK4	O.I.	H.G.	S.X.
0.39	48.3	0.88	Os03g0320100	CF280794	-	Alpha-L-arabinofuranosidase, C-terminal domaincontaining protein	1e-15	At3g10740	ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1)	O.I.	H.G.	S.X.
0.36	44.0	0.90	Os02g0745100	AK069842.1	-	NOD26-like membrane integral protein ZmNIP2-1	2e-1	At4g17340	TIP2	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.2 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.9 99.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.7 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
24.2	99.4	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
19.9	99.1	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.7	97.8	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8	97.6	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7	97.6	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6	97.5	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6	97.5	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4	97.5	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1	97.4	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0	97.4	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.030 1 GO:0006418 The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
0.012 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.030	1	GO:0006418	The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
0.012	1	GO:0045449	Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os05g0258400
Gene name
Homology with Arabidopsis	Similar to At1g53430: leucine-rich repeat family protein / protein kinase family protein (HF=2e-11)
Module size	23 genes
NF	0.56
%ile	76.3

Co-expression analysis

Gene ID Os05g0258400 Gene name Homology with ArabidopsisSimilar to At1g53430: leucine-rich repeat family protein / protein kinase family protein (HF=2e-11) Module size 23 genes NF 0.56 %ile 76.3

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os05g0258400

Gene name
Homology with Arabidopsis Similar to At1g53430: leucine-rich repeat family protein / protein kinase family protein (HF=2e-11)

Module size 23 genes

NF 0.56

%ile 76.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays