CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0255200

Gene name
Homology with Arabidopsis Similar to At4g09260: unknown protein (HF=7e+0)

Module size 6 genes

NF 0.55

%ile 74.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 0.99 Os05g0255200 9633.m01478 - - 7e+0 At4g09260 unknown protein O.I. H.G. S.X.
0.60 79.7 0.98 Os01g0260300 9629.m01542 - - 1e-1 At5g05230 ubiquitin-protein ligase O.I. H.G. S.X.
0.60 79.7 0.98 Os11g0308700 9639.m01908 - - 6e-1 At4g33350 chloroplast inner membrane import protein Tic22, putative O.I. H.G. S.X.
0.46 60.9 0.99 Os10g0331500 AK060146.1 - Conserved hypothetical protein 2e+0 At2g29740 UGT71C2 (UDP-GLUCOSYL TRANSFERASE 71C2) O.I. H.G. S.X.
0.44 58.1 0.98 Os04g0348200 9632.m02648 - - 2e+0 At5g35300 unknown protein O.I. H.G. S.X.
0.43 55.4 0.98 Os11g0239000 9639.m01244 - - 1e+1 At1g80610 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
66.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
55.2 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.7 99.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.3 98.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.3 98.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.1 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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