CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0254700

Gene name
Homology with Arabidopsis Similar to At5g41440: zinc finger (C3HC4-type RING finger) family protein (HF=2e-1)

Module size 8 genes

NF 0.40

%ile 48.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.82 95.0 0.97 Os05g0254700 9633.m01477 - - 2e-1 At5g41440 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.55 73.7 0.98 Os03g0326400 9631.m02092 - - 2e+1 At5g07230 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.48 63.7 0.98 Os04g0188301 9632.m00963 - - 1e-2 At5g20000 26S proteasome AAA-ATPase subunit, putative O.I. H.G. S.X.
0.44 58.1 0.98 Os02g0604600 9630.m03772 - - 6e-1 At1g49050 aspartyl protease family protein O.I. H.G. S.X.
0.33 38.8 0.98 Os04g0175100 9632.m00824 - - 7e-2 At3g19390 cysteine proteinase, putative / thiol protease, putative O.I. H.G. S.X.
0.30 32.7 0.98 Os11g0115000 9639.m00140 - - 5e+0 At3g60530 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.27 27.5 0.98 Os03g0567500 9631.m03544 - - 1e+1 At5g28050 cytidine/deoxycytidylate deaminase family protein O.I. H.G. S.X.
0.22 19.4 0.98 Os12g0586500 AK107528.1 - - 5e-3 At1g27770 ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.2 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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