CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0244500

Gene name
Homology with Arabidopsis Similar to At2g42820: HVA22F (HVA22-LIKE PROTEIN F) (HF=4e+0)

Module size 7 genes

NF 0.43

%ile 54.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 0.85 Os05g0244500 AK064349.1 - Glycoside hydrolase, family 5 protein 4e+0 At2g42820 HVA22F (HVA22-LIKE PROTEIN F) O.I. H.G. S.X.
0.77 93.1 0.88 Os08g0445000 AK106866.1 - Zn-finger, RING domain containing protein 1e-3 At5g57750 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.56 76.3 0.88 Os01g0262500 AK071545.1 - TRAM, LAG1 and CLN8 homology domain containingprotein 4e-1 At3g51110 crooked neck protein, putative / cell cycle protein, putative O.I. H.G. S.X.
0.48 63.7 0.87 Os01g0857600 CB965854 - Conserved hypothetical protein 8e-2 At4g17480 palmitoyl protein thioesterase family protein O.I. H.G. S.X.
0.42 53.9 0.87 Os05g0227600 AY224438.1 - Conserved hypothetical protein 3e-6 At2g24060 translation initiation factor 3 (IF-3) family protein O.I. H.G. S.X.
0.27 27.5 0.89 Os02g0158300 AU162361 - KpsF/GutQ family protein 5e-13 At3g54690 sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein O.I. H.G. S.X.
0.21 17.9 0.87 Os06g0531900 AK067909.1 - Lipolytic enzyme, G-D-S-L family protein 8e-1 At3g16100 ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	76.3	0.82	Os08g0269700	AK063209.1	-	Conserved hypothetical protein	4e-1	At1g78620	integral membrane family protein	O.I.	H.G.	S.X.
0.44	58.1	0.85	Os06g0567200	BI802211	-	Multicopper oxidase, type 1 family protein	2e-1	At1g11700	unknown protein	O.I.	H.G.	S.X.
0.42	53.9	0.80	Os06g0118700	AK120738.1	-	Peptidase aspartic family protein	2e-1	At3g49850	TRB3 (TELOMERE REPEAT BINDING FACTOR 3)	O.I.	H.G.	S.X.
0.42	53.9	0.85	Os05g0332300	AK101355.1	-	Novel serine/threonine protein kinase(CBL-interacting protein kinase 15) (SOS2-like proteinkinase PKS3)	5e-9	At5g58380	SIP1 (SOS3-INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.
0.40	51.1	0.79	Os05g0102000	AK064690.1	-	SAM dependent carboxyl methyltransferase familyprotein	4e-3	At5g55250	IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1)	O.I.	H.G.	S.X.
0.36	44.0	0.87	Os04g0644400	AK061322.1	-	Proline-rich-like protein	6e-1	At3g55880	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.73	Os12g0123500	AK072692.1	-	Apyrase precursor (EC 3.6.1.5) (ATP-diphosphatase)(Adenosine diphosphatase) (ADPase)(ATP-diphosphohydrolase)	2e-4	At5g18280	ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)	O.I.	H.G.	S.X.
0.35	41.7	0.87	Os02g0647900	AK060824.1	-	Aldehyde dehydrogenase domain containing protein	3e-1	At5g48690	-	O.I.	H.G.	S.X.
0.33	38.8	0.80	Os02g0220400	AK099607.1	-	AG-motif binding protein-4	1e-8	At4g26150	CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)	O.I.	H.G.	S.X.
0.32	36.3	0.83	Os01g0151700	AK099949.1	-	Short-chain dehydrogenase Tic32	5e-2	At2g37540	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.31	34.5	0.89	Os04g0577800	AU182546	-	Protein of unknown function UPF0136 family protein	4e-1	At2g22170	lipid-associated family protein	O.I.	H.G.	S.X.
0.29	31.1	0.77	Os04g0678700	AK065236.1	-	Protochlorophyllide reductase A, chloroplastprecursor (EC 1.3.1.33) (PCR A)(NADPH-protochlorophyllide oxidoreductase A) (POR A)	8e-4	At5g54190	PORA	O.I.	H.G.	S.X.
0.29	31.1	0.90	Os03g0323900	AK108122.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	1e-1	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.26	25.6	0.83	Os04g0545600	AK119259.1	-	Uclacyanin 3-like protein	2e+0	At3g03090	AtVGT1 (Arabidopsis thaliana vacuolar glucose transporter 1)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.4 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.2 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.7 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.3 98.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.9 98.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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