CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0244500

Gene name
Homology with Arabidopsis Similar to At2g42820: HVA22F (HVA22-LIKE PROTEIN F) (HF=4e+0)

Module size 7 genes

NF 0.43

%ile 54.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 0.85 Os05g0244500 AK064349.1 - Glycoside hydrolase, family 5 protein 4e+0 At2g42820 HVA22F (HVA22-LIKE PROTEIN F) O.I. H.G. S.X.
0.77 93.1 0.88 Os08g0445000 AK106866.1 - Zn-finger, RING domain containing protein 1e-3 At5g57750 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.56 76.3 0.88 Os01g0262500 AK071545.1 - TRAM, LAG1 and CLN8 homology domain containingprotein 4e-1 At3g51110 crooked neck protein, putative / cell cycle protein, putative O.I. H.G. S.X.
0.48 63.7 0.87 Os01g0857600 CB965854 - Conserved hypothetical protein 8e-2 At4g17480 palmitoyl protein thioesterase family protein O.I. H.G. S.X.
0.42 53.9 0.87 Os05g0227600 AY224438.1 - Conserved hypothetical protein 3e-6 At2g24060 translation initiation factor 3 (IF-3) family protein O.I. H.G. S.X.
0.27 27.5 0.89 Os02g0158300 AU162361 - KpsF/GutQ family protein 5e-13 At3g54690 sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein O.I. H.G. S.X.
0.21 17.9 0.87 Os06g0531900 AK067909.1 - Lipolytic enzyme, G-D-S-L family protein 8e-1 At3g16100 ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.46	60.9	0.85	Os05g0244500	AK064349.1	-	Glycoside hydrolase, family 5 protein	4e+0	At2g42820	HVA22F (HVA22-LIKE PROTEIN F)	O.I.	H.G.	S.X.
0.77	93.1	0.88	Os08g0445000	AK106866.1	-	Zn-finger, RING domain containing protein	1e-3	At5g57750	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.56	76.3	0.88	Os01g0262500	AK071545.1	-	TRAM, LAG1 and CLN8 homology domain containingprotein	4e-1	At3g51110	crooked neck protein, putative / cell cycle protein, putative	O.I.	H.G.	S.X.
0.48	63.7	0.87	Os01g0857600	CB965854	-	Conserved hypothetical protein	8e-2	At4g17480	palmitoyl protein thioesterase family protein	O.I.	H.G.	S.X.
0.42	53.9	0.87	Os05g0227600	AY224438.1	-	Conserved hypothetical protein	3e-6	At2g24060	translation initiation factor 3 (IF-3) family protein	O.I.	H.G.	S.X.
0.27	27.5	0.89	Os02g0158300	AU162361	-	KpsF/GutQ family protein	5e-13	At3g54690	sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein	O.I.	H.G.	S.X.
0.21	17.9	0.87	Os06g0531900	AK067909.1	-	Lipolytic enzyme, G-D-S-L family protein	8e-1	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.4 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.2 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.7 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.3 98.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.9 98.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
38.4	99.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
24.2	99.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.7	99.3	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.3	98.9	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2	98.9	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.9	98.8	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5	98.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5	98.7	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3	98.7	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5	98.6	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.205490.1.S1_at, orthologous to the query gene, Os05g0244500

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.72 92.7 PtpAffx.205490.1.S1_at At2g42820 hypothetical protein - 4e-1 At2g22320 unknown protein O.I. H.G. S.X.
0.85 97.2 PtpAffx.121010.1.A1_at At2g42820 hypothetical protein - 3e-2 At3g59080 aspartyl protease family protein O.I. H.G. S.X.
0.78 95.1 PtpAffx.218966.1.S1_s_at At2g42820 GRAS domain protein /// GRAS domain protein /// hypothetical protein /// hypothetical protein /// hypothetical protein - 4e+0 At5g58640 selenoprotein-related O.I. H.G. S.X.
0.76 94.3 PtpAffx.139572.1.S1_s_at At2g42820 hypothetical protein - 1e+0 At3g47470 LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4) O.I. H.G. S.X.
0.76 94.3 PtpAffx.201744.1.S1_at At2g42820 hypothetical protein - 3e+0 At5g10780 - O.I. H.G. S.X.
0.74 93.8 Ptp.3735.1.S1_s_at At2g42820 hypothetical protein - 1e+0 At5g26100 unknown protein O.I. H.G. S.X.
0.73 93.6 PtpAffx.207075.1.S1_at At2g42820 amino acid transporter - 8e-1 At3g17780 unknown protein O.I. H.G. S.X.
0.73 93.6 Ptp.7601.1.S1_s_at At2g42820 hypothetical protein - 9e+0 At5g06010 unknown protein O.I. H.G. S.X.
0.72 92.7 PtpAffx.203790.1.S1_s_at At2g42820 hypothetical protein - 2e-1 At3g43150 unknown protein O.I. H.G. S.X.
0.65 88.6 PtpAffx.224964.1.S1_at At2g42820 multicopper oxidase - 2e-2 At5g48100 TT10 (TRANSPARENT TESTA 10) O.I. H.G. S.X.
0.65 88.6 PtpAffx.205489.1.S1_s_at At2g42820 hypothetical protein - 7e+0 At5g17165 unknown protein O.I. H.G. S.X.
0.64 88.4 PtpAffx.30771.1.A1_at At2g42820 - - 1e+0 At1g49005 CLE11 (CLAVATA3/ESR-RELATED 11) O.I. H.G. S.X.
0.63 88.1 PtpAffx.224218.1.S1_at At2g42820 hypothetical protein - 3e-6 At5g44400 FAD-binding domain-containing protein O.I. H.G. S.X.
0.59 84.9 PtpAffx.225232.1.S1_at At2g42820 hypothetical protein - 2e-5 At4g27290 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding O.I. H.G. S.X.
0.58 84.2 PtpAffx.133781.1.A1_at At2g42820 aminophospholipid ATPase - 7e-1 At1g52630 unknown protein O.I. H.G. S.X.
0.56 83.9 PtpAffx.119469.1.S1_at At2g42820 hypothetical protein - 6e-4 At4g11290 peroxidase, putative O.I. H.G. S.X.
0.55 82.2 PtpAffx.219713.1.S1_at At2g42820 hypothetical protein - 5e-5 At1g19250 FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1) O.I. H.G. S.X.
0.54 80.8 PtpAffx.210671.1.S1_at At2g42820 hypothetical protein - 3e-2 At3g51040 RTH (RTE1-HOMOLOG) O.I. H.G. S.X.
0.52 79.4 PtpAffx.209333.1.S1_at At2g42820 hypothetical protein - 9e-1 At2g02300 AtPP2-B5 (Phloem protein 2-B5) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.72	92.7	PtpAffx.205490.1.S1_at	At2g42820	hypothetical protein	-	4e-1	At2g22320	unknown protein	O.I.	H.G.	S.X.
0.85	97.2	PtpAffx.121010.1.A1_at	At2g42820	hypothetical protein	-	3e-2	At3g59080	aspartyl protease family protein	O.I.	H.G.	S.X.
0.78	95.1	PtpAffx.218966.1.S1_s_at	At2g42820	GRAS domain protein /// GRAS domain protein /// hypothetical protein /// hypothetical protein /// hypothetical protein	-	4e+0	At5g58640	selenoprotein-related	O.I.	H.G.	S.X.
0.76	94.3	PtpAffx.139572.1.S1_s_at	At2g42820	hypothetical protein	-	1e+0	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	O.I.	H.G.	S.X.
0.76	94.3	PtpAffx.201744.1.S1_at	At2g42820	hypothetical protein	-	3e+0	At5g10780	-	O.I.	H.G.	S.X.
0.74	93.8	Ptp.3735.1.S1_s_at	At2g42820	hypothetical protein	-	1e+0	At5g26100	unknown protein	O.I.	H.G.	S.X.
0.73	93.6	PtpAffx.207075.1.S1_at	At2g42820	amino acid transporter	-	8e-1	At3g17780	unknown protein	O.I.	H.G.	S.X.
0.73	93.6	Ptp.7601.1.S1_s_at	At2g42820	hypothetical protein	-	9e+0	At5g06010	unknown protein	O.I.	H.G.	S.X.
0.72	92.7	PtpAffx.203790.1.S1_s_at	At2g42820	hypothetical protein	-	2e-1	At3g43150	unknown protein	O.I.	H.G.	S.X.
0.65	88.6	PtpAffx.224964.1.S1_at	At2g42820	multicopper oxidase	-	2e-2	At5g48100	TT10 (TRANSPARENT TESTA 10)	O.I.	H.G.	S.X.
0.65	88.6	PtpAffx.205489.1.S1_s_at	At2g42820	hypothetical protein	-	7e+0	At5g17165	unknown protein	O.I.	H.G.	S.X.
0.64	88.4	PtpAffx.30771.1.A1_at	At2g42820	-	-	1e+0	At1g49005	CLE11 (CLAVATA3/ESR-RELATED 11)	O.I.	H.G.	S.X.
0.63	88.1	PtpAffx.224218.1.S1_at	At2g42820	hypothetical protein	-	3e-6	At5g44400	FAD-binding domain-containing protein	O.I.	H.G.	S.X.
0.59	84.9	PtpAffx.225232.1.S1_at	At2g42820	hypothetical protein	-	2e-5	At4g27290	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	O.I.	H.G.	S.X.
0.58	84.2	PtpAffx.133781.1.A1_at	At2g42820	aminophospholipid ATPase	-	7e-1	At1g52630	unknown protein	O.I.	H.G.	S.X.
0.56	83.9	PtpAffx.119469.1.S1_at	At2g42820	hypothetical protein	-	6e-4	At4g11290	peroxidase, putative	O.I.	H.G.	S.X.
0.55	82.2	PtpAffx.219713.1.S1_at	At2g42820	hypothetical protein	-	5e-5	At1g19250	FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1)	O.I.	H.G.	S.X.
0.54	80.8	PtpAffx.210671.1.S1_at	At2g42820	hypothetical protein	-	3e-2	At3g51040	RTH (RTE1-HOMOLOG)	O.I.	H.G.	S.X.
0.52	79.4	PtpAffx.209333.1.S1_at	At2g42820	hypothetical protein	-	9e-1	At2g02300	AtPP2-B5 (Phloem protein 2-B5)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os05g0244500
Gene name
Homology with Arabidopsis	Similar to At2g42820: HVA22F (HVA22-LIKE PROTEIN F) (HF=4e+0)
Module size	7 genes
NF	0.43
%ile	54.3

Co-expression analysis

Gene ID Os05g0244500 Gene name Homology with ArabidopsisSimilar to At2g42820: HVA22F (HVA22-LIKE PROTEIN F) (HF=4e+0) Module size 7 genes NF 0.43 %ile 54.3

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os05g0244500

Gene name
Homology with Arabidopsis Similar to At2g42820: HVA22F (HVA22-LIKE PROTEIN F) (HF=4e+0)

Module size 7 genes

NF 0.43

%ile 54.3

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays