Co-expression analysis

Gene ID	Os05g0244500
Gene name
Homology with Arabidopsis	Similar to At2g42820: HVA22F (HVA22-LIKE PROTEIN F) (HF=4e+0)
Module size	7 genes
NF	0.43
%ile	54.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	60.9	0.85	Os05g0244500	AK064349.1	-	Glycoside hydrolase, family 5 protein	4e+0	At2g42820	HVA22F (HVA22-LIKE PROTEIN F)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	0.88	Os08g0445000	AK106866.1	-	Zn-finger, RING domain containing protein	1e-3	At5g57750	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.56	76.3	0.88	Os01g0262500	AK071545.1	-	TRAM, LAG1 and CLN8 homology domain containingprotein	4e-1	At3g51110	crooked neck protein, putative / cell cycle protein, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.48	63.7	0.87	Os01g0857600	CB965854	-	Conserved hypothetical protein	8e-2	At4g17480	palmitoyl protein thioesterase family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.42	53.9	0.87	Os05g0227600	AY224438.1	-	Conserved hypothetical protein	3e-6	At2g24060	translation initiation factor 3 (IF-3) family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	27.5	0.89	Os02g0158300	AU162361	-	KpsF/GutQ family protein	5e-13	At3g54690	sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.21	17.9	0.87	Os06g0531900	AK067909.1	-	Lipolytic enzyme, G-D-S-L family protein	8e-1	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
38.4	99.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
24.2	99.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.7	99.3	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.3	98.9	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2	98.9	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.9	98.8	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5	98.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5	98.7	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3	98.7	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5	98.6	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, HU10K22u_s_at, orthologous to the query gene, Os05g0244500

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	HU10K22u_s_at	At2g42820	-	-	1e+0	At3g13170	ATSPO11-1	O.I.	H.G.	S.X.	Please select
0.60	77.3	HVSMEn0023O21f_s_at	At2g42820	-	-	9e-1	At3g52300	ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig2490_at	At2g42820	-	-	1e-6	At1g62660	beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar	O.I.	H.G.	S.X.	Please select
0.45	59.3	HVSMEc0009P17f_s_at	At2g42820	-	-	1e-2	At3g10280	KCS14 (3-KETOACYL-COA SYNTHASE 14)	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig1890_at	At2g42820	-	-	9e-3	At5g40770	ATPHB3 (PROHIBITIN 3)	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig17124_at	At2g42820	-	-	6e-1	At3g20180	metal ion binding	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig78_s_at	At2g42820	-	-	4e-5	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig18532_at	At2g42820	-	-	3e+0	At2g44310	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig20846_at	At2g42820	-	-	3e-6	At4g36860	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig20893_at	At2g42820	-	-	4e-2	At1g44542	cyclase family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	HP01O07w_at	At2g42820	-	-	3e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig10728_at	At2g42820	-	-	4e+0	At5g04520	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig17756_at	At2g42820	-	-	2e+0	At5g56330	ACA8 (ALPHA CARBONIC ANHYDRASE 8)	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig14353_at	At2g42820	-	-	9e-3	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig18430_at	At2g42820	-	-	2e-2	At1g18340	basal transcription factor complex subunit-related	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig21646_at	At2g42820	-	-	1e+0	At5g42180	peroxidase 64 (PER64) (P64) (PRXR4)	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig20065_at	At2g42820	-	-	4e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	O.I.	H.G.	S.X.	Please select
0.34	43.6	HY10B09u_s_at	At2g42820	-	-	3e+0	At4g00893	-	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig7635_s_at	At2g42820	-	-	3e-1	At5g42630	ATS (ABERRANT TESTA SHAPE)	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig2748_at	At2g42820	-	-	1e-2	At4g20130	PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig8559_at	At2g42820	-	-	3e+0	At5g54100	band 7 family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	rbags16i08_s_at	At2g42820	-	-	8e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig6353_at	At2g42820	-	-	3e+0	At5g63230	-	O.I.	H.G.	S.X.	Please select
0.27	32.1	HO11K23S_s_at	At2g42820	-	-	4e+0	At3g17420	GPK1	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig3565_s_at	At2g42820	-	-	2e-1	At4g01430	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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