CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0244500

Gene name
Homology with Arabidopsis Similar to At2g42820: HVA22F (HVA22-LIKE PROTEIN F) (HF=4e+0)

Module size 7 genes

NF 0.43

%ile 54.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 0.85 Os05g0244500 AK064349.1 - Glycoside hydrolase, family 5 protein 4e+0 At2g42820 HVA22F (HVA22-LIKE PROTEIN F) O.I. H.G. S.X.
0.77 93.1 0.88 Os08g0445000 AK106866.1 - Zn-finger, RING domain containing protein 1e-3 At5g57750 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.56 76.3 0.88 Os01g0262500 AK071545.1 - TRAM, LAG1 and CLN8 homology domain containingprotein 4e-1 At3g51110 crooked neck protein, putative / cell cycle protein, putative O.I. H.G. S.X.
0.48 63.7 0.87 Os01g0857600 CB965854 - Conserved hypothetical protein 8e-2 At4g17480 palmitoyl protein thioesterase family protein O.I. H.G. S.X.
0.42 53.9 0.87 Os05g0227600 AY224438.1 - Conserved hypothetical protein 3e-6 At2g24060 translation initiation factor 3 (IF-3) family protein O.I. H.G. S.X.
0.27 27.5 0.89 Os02g0158300 AU162361 - KpsF/GutQ family protein 5e-13 At3g54690 sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein O.I. H.G. S.X.
0.21 17.9 0.87 Os06g0531900 AK067909.1 - Lipolytic enzyme, G-D-S-L family protein 8e-1 At3g16100 ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.4 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.2 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.7 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.3 98.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.9 98.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g42820, orthologous to the query gene, Os05g0244500

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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