Co-expression analysis

Gene ID Os05g0238400
Gene name
Homology with ArabidopsisSimilar to At2g30560: glycine-rich protein (HF=4e-2)
Module size 6 genes
NF 0.58
%ile 79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.60.94Os05g0238400AK073471.1-Conserved hypothetical protein4e-2At2g30560glycine-rich proteinO.I.H.G.S.X.
0.8094.60.96Os02g0677800AK064865.1-40S ribosomal protein S13-25e-13At3g6077040S ribosomal protein S13 (RPS13A)O.I.H.G.S.X.
0.6787.20.95Os11g0582700AK103872.1-Cyclin-like F-box domain containing protein7e-3At5g11100SYTDO.I.H.G.S.X.
0.4458.10.95Os12g0130900AK066915.1-TPR-like domain containing protein3e-2At1g76980-O.I.H.G.S.X.
0.4051.10.95Os03g02517009631.m01412-Protein kinase domain containing protein3e-1At4g20220-O.I.H.G.S.X.
0.2931.10.96Os07g0642400NM_188825.1-SNF2-related domain containing protein2e-5At5g05130SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.699.5GSM1952305d-seedGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
15.598.7GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.398.7GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.498.5GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.198.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.398.3GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.198.3GSM377083Genomic DNA - 45 day old leaf sample - mutant g6989GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.598.2GSM159204Inflorescence (P6, 22 - 30 cm), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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