Co-expression analysis

Gene ID Os05g0227600
Gene name
Homology with ArabidopsisSimilar to At2g24060: translation initiation factor 3 (IF-3) family protein (HF=3e-6)
Module size 9 genes
NF 0.46
%ile 60.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5471.90.87Os05g0227600AY224438.1-Conserved hypothetical protein3e-6At2g24060translation initiation factor 3 (IF-3) family proteinO.I.H.G.S.X.
0.6787.20.88Os08g0445000AK106866.1-Zn-finger, RING domain containing protein1e-3At5g57750zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5877.00.87Os04g0644400AK061322.1-Proline-rich-like protein6e-1At3g55880unknown proteinO.I.H.G.S.X.
0.5471.90.87Os01g0262500AK071545.1-TRAM, LAG1 and CLN8 homology domain containingprotein4e-1At3g51110crooked neck protein, putative / cell cycle protein, putativeO.I.H.G.S.X.
0.4863.70.87Os02g0647900AK060824.1-Aldehyde dehydrogenase domain containing protein3e-1At5g48690-O.I.H.G.S.X.
0.4458.10.87Os01g0857600CB965854-Conserved hypothetical protein8e-2At4g17480palmitoyl protein thioesterase family proteinO.I.H.G.S.X.
0.3846.90.87Os08g0460000AB010876.1-Germin-like protein 5 (Germin-like protein 1)5e-1At3g51060STY1 (STYLISH 1)O.I.H.G.S.X.
0.3338.80.86Os03g0323900AK108122.1-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein1e-1At1g04445zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.3338.80.87Os06g0531900AK067909.1-Lipolytic enzyme, G-D-S-L family protein8e-1At3g16100ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.998.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.698.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.598.5GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.598.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.398.4GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.798.4GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.498.3GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.298.3GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.498.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.098.2GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0331GO:0006464The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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