Co-expression analysis

Gene ID Os05g0207900
Gene name
Homology with ArabidopsisSimilar to At1g09730: Ulp1 protease family protein (HF=4e-10)
Module size 10 genes
NF 0.54
%ile 72.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7088.40.97Os05g0207900AK068570.1-Peptidase C48, SUMO/Sentrin/Ubl1 family protein4e-10At1g09730Ulp1 protease family proteinO.I.H.G.S.X.
0.8496.00.97Os07g0623100AK108461.1-ER66 protein (Fragment)3e-6At5g09410EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN)O.I.H.G.S.X.
0.7189.60.97Os04g0550400AK067475.1-Conserved hypothetical protein4e-1At2g44950HUB1 (HISTONE MONO-UBIQUITINATION 1)O.I.H.G.S.X.
0.5676.30.97Os05g0126300CB635555-Conserved hypothetical protein1e-2At3g57740protein kinase family proteinO.I.H.G.S.X.
0.4762.30.97Os05g0144300AK068173.1-Type III restriction enzyme, res subunit familyprotein2e-28At3g06010ATCHR12O.I.H.G.S.X.
0.4660.90.97Os02g0114000CB675710-SNF2-related domain containing protein1e+0At4g21800QQT2 (quatre-quart2)O.I.H.G.S.X.
0.4458.10.97Os11g0303500AK068734.1-Hypothetical protein3e-1At5g01900WRKY62O.I.H.G.S.X.
0.4458.10.97Os12g0102400AK103750.1-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein6e-16At3g45630RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4355.40.97Os04g0440100AK105415.1-Nonsense-mediated decay UPF3 domain containingprotein2e-9At1g33980Smg-4/UPF3 family proteinO.I.H.G.S.X.
0.4253.90.97Os07g0495900AK060293.1-Regulator of nonsense transcripts 1 homolog1e-6At5g47010LBA1 (LOW-LEVEL BETA-AMYLASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.799.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
17.398.9GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.998.7GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.998.7GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
14.198.5GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.098.4GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.398.3GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.798.2GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.398.2GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.298.2GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2862GO:0009307Any process that protect an organism from invading foreign DNA by methylation of self DNA at specific sequences and nucleolytic cleavage of unmethylated foreign DNA.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage