CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0202800

Gene name
Homology with Arabidopsis Similar to At3g15353: MT3 (METALLOTHIONEIN 3) (HF=3e-7)

Module size 8 genes

NF 0.23

%ile 21.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 0.79 Os05g0202800 AF009959.1 - Plant metallothionein, family 15 protein 3e-7 At3g15353 MT3 (METALLOTHIONEIN 3) O.I. H.G. S.X.
0.40 51.1 0.83 Os01g0743800 9629.m05269 - Histidine-containing phosphotransfer protein 4 2e+0 At3g57310 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.39 48.3 0.82 Os01g0155500 AK099840.1 - Resistance protein candidate (Fragment) 1e-1 At5g54380 THE1 (THESEUS1) O.I. H.G. S.X.
0.38 46.9 0.84 Os04g0632100 AF403127.1 - - 9e-8 At4g21370 S-locus protein kinase, putative O.I. H.G. S.X.
0.27 27.5 0.83 Os05g0530400 AY344492.1 - Heat shock factor protein 1 (HSF 1) (Heat shocktranscription factor 1) (HSTF 1) 1e-9 At5g03720 AT-HSFA3 O.I. H.G. S.X.
0.18 13.7 0.84 Os02g0787300 AK120525.1 - MAP kinase kinase 2e-1 At5g05230 ubiquitin-protein ligase O.I. H.G. S.X.
0.14 9.3 0.82 Os01g0728300 AK073238.1 - Cytochrome P450 monooxygenase CYP72A5 (Fragment) 1e+0 At3g14680 CYP72A14 O.I. H.G. S.X.
0.12 7.2 0.80 Os03g0148700 AK065978.1 - Protein kinase domain containing protein 9e-7 At1g10620 protein kinase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.8 99.8 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
17.8 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 1 GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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