CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0200500

Gene name
Homology with Arabidopsis Similar to At2g25760: protein kinase family protein (HF=3e-38)

Module size 22 genes

NF 0.32

%ile 34.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.94 Os05g0200500 AK100357.1 - Serine/threonine protein kinase 3e-38 At2g25760 protein kinase family protein O.I. H.G. S.X.
0.47 62.3 0.96 Os08g0180300 AK100130.1 - SNF2-related domain containing protein 2e-12 At1g50410 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein O.I. H.G. S.X.
0.43 55.4 0.96 Os12g0583000 AK110753.1 - - 4e-11 At2g40190 glycosyl transferase family 1 protein O.I. H.G. S.X.
0.42 53.9 0.96 Os01g0182900 AK061255.1 - Hypothetical protein 1e+1 At5g16023 RTFL18 (ROTUNDIFOLIA LIKE 18) O.I. H.G. S.X.
0.37 45.0 0.96 Os09g0566100 AK065725.1 - Protein of unknown function DUF618 domaincontaining protein 1e-1 At2g36480 zinc finger (C2H2-type) family protein O.I. H.G. S.X.
0.36 44.0 0.96 Os10g0477000 AK106419.1 - ARM repeat fold domain containing protein 1e-1 At3g04490 unknown protein O.I. H.G. S.X.
0.33 38.8 0.96 Os08g0374200 CR278593 - Conserved hypothetical protein 2e+0 At5g44130 FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR) O.I. H.G. S.X.
0.33 38.8 0.97 Os01g0549200 AK060747.1 - ATP-binding region, ATPase-like domain containingprotein 1e-2 At4g36280 ATP-binding region, ATPase-like domain-containing protein O.I. H.G. S.X.
0.33 38.8 0.97 Os03g0853700 AK069032.1 - Conserved hypothetical protein 1e-7 At5g08550 ILP1 (increased level of polyploidy1-1D) O.I. H.G. S.X.
0.31 34.5 0.96 Os11g0139500 AK103113.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 4e-2 At4g35040 bZIP transcription factor family protein O.I. H.G. S.X.
0.31 34.5 0.96 Os06g0632700 AK101148.1 - Octicosapeptide/Phox/Bem1p domain containingprotein 4e-1 At1g50700 CPK33 O.I. H.G. S.X.
0.31 34.5 0.96 Os02g0294700 AK070497.1 - Conserved hypothetical protein 7e-6 At1g79090 unknown protein O.I. H.G. S.X.
0.30 32.7 0.96 Os09g0309100 AK066095.1 - SWIM Zn-finger domain containing protein 5e-3 At1g60560 SWIM zinc finger family protein O.I. H.G. S.X.
0.30 32.7 0.95 Os03g0851600 AK101177.1 - The start codon is not identified. 1e-7 At5g19920 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.28 31.1 0.95 Os03g0306200 9631.m01910 - Cytochrome cd1-nitrite reductase-like, C-terminalhaem d1 domain containing protein 3e-49 At5g49430 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.27 27.5 0.96 Os04g0609700 AK101763.1 - The start codon is not identified. 3e-17 At1g79350 EMB1135 (embryo defective 1135) O.I. H.G. S.X.
0.27 27.5 0.96 Os07g0660200 AK067331.1 - Chromodomain-helicase-DNA-binding protein,CHD-1-related 6e-28 At2g13370 CHR5 (chromatin remodeling 5) O.I. H.G. S.X.
0.27 27.5 0.96 Os01g0279900 AB051296.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 6e-11 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) O.I. H.G. S.X.
0.26 25.6 0.96 Os03g0210800 BQ908513 - DNA polymerase, beta-like region domain containingprotein 6e+0 At5g60190 Ulp1 protease family protein O.I. H.G. S.X.
0.24 22.4 0.96 Os08g0178300 AK068383.1 - Conserved hypothetical protein 8e-11 At1g31870 unknown protein O.I. H.G. S.X.
0.23 21.2 0.95 Os01g0234800 AK063827.1 - Vesicle trafficking protein SEC22b (SEC22 vesicletrafficking protein- like 1) 2e-26 At1g11890 SEC22 O.I. H.G. S.X.
0.16 11.3 0.96 Os01g0337600 AK119468.1 - Protein of unknown function DUF625 domaincontaining protein 8e-4 At3g06670 binding O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	95.8	0.94	Os05g0200500	AK100357.1	-	Serine/threonine protein kinase	3e-38	At2g25760	protein kinase family protein	O.I.	H.G.	S.X.
0.47	62.3	0.96	Os08g0180300	AK100130.1	-	SNF2-related domain containing protein	2e-12	At1g50410	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	O.I.	H.G.	S.X.
0.43	55.4	0.96	Os12g0583000	AK110753.1	-	-	4e-11	At2g40190	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.
0.42	53.9	0.96	Os01g0182900	AK061255.1	-	Hypothetical protein	1e+1	At5g16023	RTFL18 (ROTUNDIFOLIA LIKE 18)	O.I.	H.G.	S.X.
0.37	45.0	0.96	Os09g0566100	AK065725.1	-	Protein of unknown function DUF618 domaincontaining protein	1e-1	At2g36480	zinc finger (C2H2-type) family protein	O.I.	H.G.	S.X.
0.36	44.0	0.96	Os10g0477000	AK106419.1	-	ARM repeat fold domain containing protein	1e-1	At3g04490	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.96	Os08g0374200	CR278593	-	Conserved hypothetical protein	2e+0	At5g44130	FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR)	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os01g0549200	AK060747.1	-	ATP-binding region, ATPase-like domain containingprotein	1e-2	At4g36280	ATP-binding region, ATPase-like domain-containing protein	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os03g0853700	AK069032.1	-	Conserved hypothetical protein	1e-7	At5g08550	ILP1 (increased level of polyploidy1-1D)	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os11g0139500	AK103113.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	4e-2	At4g35040	bZIP transcription factor family protein	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os06g0632700	AK101148.1	-	Octicosapeptide/Phox/Bem1p domain containingprotein	4e-1	At1g50700	CPK33	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os02g0294700	AK070497.1	-	Conserved hypothetical protein	7e-6	At1g79090	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.96	Os09g0309100	AK066095.1	-	SWIM Zn-finger domain containing protein	5e-3	At1g60560	SWIM zinc finger family protein	O.I.	H.G.	S.X.
0.30	32.7	0.95	Os03g0851600	AK101177.1	-	The start codon is not identified.	1e-7	At5g19920	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.28	31.1	0.95	Os03g0306200	9631.m01910	-	Cytochrome cd1-nitrite reductase-like, C-terminalhaem d1 domain containing protein	3e-49	At5g49430	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.27	27.5	0.96	Os04g0609700	AK101763.1	-	The start codon is not identified.	3e-17	At1g79350	EMB1135 (embryo defective 1135)	O.I.	H.G.	S.X.
0.27	27.5	0.96	Os07g0660200	AK067331.1	-	Chromodomain-helicase-DNA-binding protein,CHD-1-related	6e-28	At2g13370	CHR5 (chromatin remodeling 5)	O.I.	H.G.	S.X.
0.27	27.5	0.96	Os01g0279900	AB051296.1	-	Basic-leucine zipper (bZIP) transcription factordomain containing protein	6e-11	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	O.I.	H.G.	S.X.
0.26	25.6	0.96	Os03g0210800	BQ908513	-	DNA polymerase, beta-like region domain containingprotein	6e+0	At5g60190	Ulp1 protease family protein	O.I.	H.G.	S.X.
0.24	22.4	0.96	Os08g0178300	AK068383.1	-	Conserved hypothetical protein	8e-11	At1g31870	unknown protein	O.I.	H.G.	S.X.
0.23	21.2	0.95	Os01g0234800	AK063827.1	-	Vesicle trafficking protein SEC22b (SEC22 vesicletrafficking protein- like 1)	2e-26	At1g11890	SEC22	O.I.	H.G.	S.X.
0.16	11.3	0.96	Os01g0337600	AK119468.1	-	Protein of unknown function DUF625 domaincontaining protein	8e-4	At3g06670	binding	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.5 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.2 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.2 98.7 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
9.9 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
18.5	99.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.2	98.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.2	98.7	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
9.9	98.0	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8	97.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5	97.7	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os05g0200500
Gene name
Homology with Arabidopsis	Similar to At2g25760: protein kinase family protein (HF=3e-38)
Module size	22 genes
NF	0.32
%ile	34.5

Co-expression analysis

Gene ID Os05g0200500 Gene name Homology with ArabidopsisSimilar to At2g25760: protein kinase family protein (HF=3e-38) Module size 22 genes NF 0.32 %ile 34.5

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os05g0200500

Gene name
Homology with Arabidopsis Similar to At2g25760: protein kinase family protein (HF=3e-38)

Module size 22 genes

NF 0.32

%ile 34.5

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays