CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0200100

Gene name
Homology with Arabidopsis Similar to At4g29670: thioredoxin family protein (HF=3e-30)

Module size 19 genes

NF 0.44

%ile 55.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.78 93.4 0.94 Os05g0200100 AK061208.1 - Thioredoxin-related domain containing protein 3e-30 At4g29670 thioredoxin family protein O.I. H.G. S.X.
0.63 82.7 0.96 Os05g0571400 AK062369.1 - Conserved hypothetical protein 4e-4 At1g64355 unknown protein O.I. H.G. S.X.
0.58 77.0 0.94 Os02g0610800 AK099736.1 - Protein of unknown function DUF1092 family protein 7e-1 At4g39260 GR-RBP8 O.I. H.G. S.X.
0.55 73.7 0.94 Os05g0404200 AK071730.1 - Methionine sulfoxide reductase B domain containingprotein 2e-18 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) O.I. H.G. S.X.
0.54 71.9 0.95 Os05g0388500 AK065313.1 - 50S ribosomal protein L1 2e-26 At3g63490 ribosomal protein L1 family protein O.I. H.G. S.X.
0.54 71.9 0.96 Os06g0146300 AK101052.1 - Conserved hypothetical protein 6e-2 At5g27560 unknown protein O.I. H.G. S.X.
0.53 71.3 0.96 Os03g0331600 AK063782.1 - Conserved hypothetical protein 2e-12 At5g58250 unknown protein O.I. H.G. S.X.
0.52 69.6 0.94 Os08g0167500 AK061061.1 - - 1e-5 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.
0.46 60.9 0.94 Os05g0481000 AK059369.1 - Serine/threonine protein phosphatase 2B catalyticsubunit, beta isoform (EC 3.1.3.16) (Calmodulin-dependentcalcineurin A subunit, beta isoform) (CAM-PRP catalyticsubunit). Splice isoform 2 1e-17 At1g32070 ATNSI (NUCLEAR SHUTTLE INTERACTING) O.I. H.G. S.X.
0.44 58.1 0.96 Os02g0794400 AK065845.1 - Initiation factor 3 family protein 2e-1 At4g31150 endonuclease V family protein O.I. H.G. S.X.
0.42 53.9 0.95 Os08g0562100 AK105935.1 - Sorghum chloroplast CM3 malate dehydrogenase(NADP) (Fragment) 7e-20 At5g58330 malate dehydrogenase (NADP), chloroplast, putative O.I. H.G. S.X.
0.41 52.4 0.95 Os03g0729200 AK059020.1 - Conserved hypothetical protein 6e-1 At5g65840 - O.I. H.G. S.X.
0.40 51.1 0.95 Os07g0260300 AK066852.1 - Thioredoxin-like domain containing protein 2e-4 At1g21350 antioxidant/ oxidoreductase O.I. H.G. S.X.
0.38 46.9 0.94 Os07g0204900 AK065213.1 - Zeta-carotene desaturase (Fragment) 1e-19 At3g04870 ZDS (ZETA-CAROTENE DESATURASE) O.I. H.G. S.X.
0.33 38.8 0.96 Os02g0567100 AK066393.1 - Thioredoxin-related domain containing protein 7e+0 At5g28820 unknown protein O.I. H.G. S.X.
0.31 34.5 0.96 Os09g0249900 AK099860.1 - Ferredoxin-thioredoxin reductase (Fragment) 2e-18 At2g04700 ferredoxin thioredoxin reductase catalytic beta chain family protein O.I. H.G. S.X.
0.29 31.1 0.95 Os01g0924000 AK120797.1 - Chloroplast 50S ribosomal protein L27 (Fragment) 6e-2 At5g40950 RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) O.I. H.G. S.X.
0.28 31.1 0.94 Os01g0798500 AK068219.1 - Malate synthase-like family protein 2e-3 At5g44650 unknown protein O.I. H.G. S.X.
0.24 22.4 0.96 Os01g0633000 AK062051.1 - Ribosomal protein L31 family protein 4e-1 At4g03590 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.4 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.3 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.049 1 GO:0006099 A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
0.043 1 GO:0006413 The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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