CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0183900

Gene name
Homology with Arabidopsis Similar to At2g28500: LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11) (HF=3e+0)

Module size 6 genes

NF 0.40

%ile 48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.97 Os05g0183900 9633.m00822 - - 3e+0 At2g28500 LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11) O.I. H.G. S.X.
0.67 87.2 0.98 Os03g0113600 9631.m00133 - - 2e+0 At4g26840 SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) O.I. H.G. S.X.
0.67 87.2 0.98 Os07g0122800 9635.m00218 - - 1e-1 At5g41440 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.30 32.7 0.98 Os09g0447800 9637.m02416 - - 3e-4 At1g74720 C2 domain-containing protein O.I. H.G. S.X.
0.30 32.7 0.98 Os07g0110766 NM_186178.1 - - 3e+0 At2g42130 unknown protein O.I. H.G. S.X.
0.21 17.9 0.98 Os01g0341900 9629.m02310 - - 4e-2 At4g28730 glutaredoxin family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
39.6 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.6 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.5 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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