Co-expression analysis

Gene ID Os05g0163300
Gene name
Homology with ArabidopsisSimilar to At1g29420: - (HF=6e-1)
Module size 7 genes
NF 0.45
%ile 57.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3032.70.78Os05g0163300AK105598.1-Beta-Ig-H3/fasciclin domain containing protein6e-1At1g29420-O.I.H.G.S.X.
0.6079.70.92Os10g0150700AK067147.1-Protein of unknown function DUF1210 family protein2e+0At5g46060unknown proteinO.I.H.G.S.X.
0.5573.70.88Os10g0150600AK072923.1-Protein of unknown function DUF1210 family protein5e-1At2g01760ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14)O.I.H.G.S.X.
0.5068.00.86Os10g0150400CF308064-Protein of unknown function DUF1210 family protein2e+0At5g14340AtMYB40 (myb domain protein 40)O.I.H.G.S.X.
0.4660.90.86Os10g0150800AK061299.1-Protein of unknown function DUF1210 family protein2e+0At5g14340AtMYB40 (myb domain protein 40)O.I.H.G.S.X.
0.4660.90.88Os05g0190500AK060968.1-Acid phosphatase (Class B) family protein2e+0At1g20340DRT112O.I.H.G.S.X.
0.4051.10.85Os05g0189300AK060874.1-Acid phosphatase (Class B) family protein8e+0At5g01870lipid transfer protein, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.397.5GSM99860TCHW P3_m103 control, biological rep3GSE4438Expression data from rice under salinity stressLink to GEO
6.597.2GSM99859TCHW P2_m103 control, biological rep2GSE4438Expression data from rice under salinity stressLink to GEO
5.997.0GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.997.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.897.0GSM99858TCHW P1_m103 control, biological rep1GSE4438Expression data from rice under salinity stressLink to GEO
5.496.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.396.7GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.396.7GSM67052FL478 control replicate 1GSE3053Rice salt expressionLink to GEO
5.396.7GSM429984Rice wild-type panicle rep2GSE17194Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicleLink to GEO
5.296.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0711GO:0007155The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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