CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0156500

Gene name
Homology with Arabidopsis Similar to At3g62600: ATERDJ3B (HF=2e-10)

Module size 6 genes

NF 0.31

%ile 33.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.92 Os05g0156500 AK062718.1 - Apobec-1 binding protein 2 2e-10 At3g62600 ATERDJ3B O.I. H.G. S.X.
0.73 91.1 0.89 Os06g0150400 AK067407.1 - Saposin B domain containing protein 2e-4 At4g29520 - O.I. H.G. S.X.
0.50 68.0 0.95 Os02g0115900 AF006825.1 - Endosperm lumenal binding protein 0 At5g42020 BIP2 O.I. H.G. S.X.
0.43 55.4 0.91 Os09g0451500 AK072941.1 - Thioredoxin-related domain containing protein 1e-18 At1g04980 ATPDIL2-2 (PDI-LIKE 2-2) O.I. H.G. S.X.
0.20 16.5 0.91 Os06g0716700 AK063385.1 - Endoplasmin homolog precursor (GRP94 homolog) 2e-67 At4g24190 SHD (SHEPHERD) O.I. H.G. S.X.
0.07 3.7 0.92 Os03g0213100 AK073633.1 - Protein transport protein Sec61 alpha subunit 8e-57 At1g29310 P-P-bond-hydrolysis-driven protein transmembrane transporter O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.2 99.4 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
14.6 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
11.5 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.049 2 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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