CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0151400

Gene name
Homology with Arabidopsis Similar to At4g02510: TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159) (HF=2e-3)

Module size 11 genes

NF 0.41

%ile 50.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.91 Os05g0151400 AK102924.1 - Chloroplast protein import component Toc86/159domain containing protein 2e-3 At4g02510 TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159) O.I. H.G. S.X.
0.44 58.1 0.94 Os03g0792400 AK062004.1 - Peptidase M50 family protein 5e-21 At5g35220 EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1) O.I. H.G. S.X.
0.44 58.1 0.94 Os06g0601000 AK071330.1 - Homeodomain-like containing protein 4e-2 At3g59940 kelch repeat-containing F-box family protein O.I. H.G. S.X.
0.42 53.9 0.93 Os03g0108600 AK065776.1 - DEAD/DEAH box helicase, N-terminal domaincontaining protein 2e-5 At3g06980 DEAD/DEAH box helicase, putative O.I. H.G. S.X.
0.40 51.1 0.95 Os03g0824100 AK065308.1 - TPR-like domain containing protein 3e-1 At3g56380 ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17) O.I. H.G. S.X.
0.38 46.9 0.93 Os01g0815700 AK073519.1 - Zn-finger, Ran-binding domain containing protein 5e-10 At5g17790 VAR3 (VARIEGATED 3) O.I. H.G. S.X.
0.38 46.9 0.94 Os04g0692200 AK071726.1 - Conserved hypothetical protein 1e-2 At3g17160 unknown protein O.I. H.G. S.X.
0.35 41.7 0.93 Os06g0652000 AB120430.1 - DNA directed RNA polymerase (EC 2.7.7.6) 3e-8 At2g24120 SCA3 (SCABRA 3) O.I. H.G. S.X.
0.31 34.5 0.94 Os03g0107800 AK062666.1 - Hypothetical protein 4e-2 At3g22290 unknown protein O.I. H.G. S.X.
0.29 31.1 0.94 Os07g0583200 AK071674.1 - Mitochodrial transcription terminationfactor-related family protein 4e-3 At5g55580 mitochondrial transcription termination factor family protein / mTERF family protein O.I. H.G. S.X.
0.27 27.5 0.93 Os06g0625400 AK066566.1 - Peptidase M16, C-terminal domain containingprotein 5e-41 At5g42390 metalloendopeptidase O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.3 98.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.0 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.091 1 GO:0006298 A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
0.043 1 GO:0006350 The synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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