Co-expression analysis

Gene ID Os05g0138200
Gene name
Homology with ArabidopsisSimilar to At3g54420: ATEP3 (HF=2e-3)
Module size 6 genes
NF 0.54
%ile 72.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4051.10.93Os05g0138200AK110261.1-Chitinase (Class II) (EC 3.2.1.14)2e-3At3g54420ATEP3O.I.H.G.S.X.
0.8094.60.93Os02g0614300AK112070.1-ANT (Ovule development protein aintegumenta)5e-20At1g51190PLT2 (PLETHORA 2)O.I.H.G.S.X.
0.7793.10.91Os01g0936900AK073591.1-Peptidase aspartic family protein1e+1At5g64667IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2)O.I.H.G.S.X.
0.4051.10.93Os02g0111800AK111191.1-Protein kinase domain containing protein7e-3At1g08590CLAVATA1 receptor kinase (CLV1)O.I.H.G.S.X.
0.3846.90.91Os06g0634000AK073652.1-Hypothetical protein2e+0At2g41050PQ-loop repeat family protein / transmembrane family proteinO.I.H.G.S.X.
0.3846.90.93Os03g0347700AK110492.1-NPH3 domain containing protein1e-9At2g47860phototropic-responsive NPH3 family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.299.5GSM100441Rice Azucena 1ppm Arsenate Rep1GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
12.598.3GSM195220stigma 3, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
10.998.1GSM100442Rice Azucena 1ppm Arsenate Rep2GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
10.098.0GSM195219stigma 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
9.497.9GSM195218stigma 1, biological rep1GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
7.597.5GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.997.3GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.797.3GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1051GO:0006032The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues.Link to AmiGO
0.1051GO:0051707A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.Link to AmiGO
0.0771GO:0016998The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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