CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0130400

Gene name
Homology with Arabidopsis Similar to At5g44610: MAP18 (Microtubule-associated Protein 18) (HF=4e+0)

Module size 16 genes

NF 0.24

%ile 22.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.78 Os05g0130400 AK064692.1 - Plant protein of unknown function family protein 4e+0 At5g44610 MAP18 (Microtubule-associated Protein 18) O.I. H.G. S.X.
0.59 78.0 0.89 Os08g0463500 AK058457.1 - Zn-finger, C2H2 type domain containing protein 6e-1 At5g67420 LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37) O.I. H.G. S.X.
0.40 51.1 0.93 Os02g0811000 AK111446.1 - Ribulose bisphosphate carboxylase, large chainfamily protein 1e-18 At5g28490 LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) O.I. H.G. S.X.
0.31 34.5 0.94 Os08g0191800 9636.m00880 - Aminoacyl-tRNA synthetase, class Ib domaincontaining protein 2e-6 At1g28350 ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tyrosine-tRNA ligase O.I. H.G. S.X.
0.31 34.5 0.95 Os10g0568100 AK111422.1 - Conserved hypothetical protein 8e-1 At1g08170 histone H2B family protein O.I. H.G. S.X.
0.30 32.7 0.93 Os07g0597300 9635.m04061 - Conserved hypothetical protein 4e-3 At1g06420 unknown protein O.I. H.G. S.X.
0.29 31.1 0.95 Os04g0544200 9632.m04428 - Cyclin-like domain containing protein 5e-3 At3g58510 DEAD box RNA helicase, putative (RH11) O.I. H.G. S.X.
0.19 15.1 0.96 Os07g0193400 9635.m00919 - - 2e-3 At5g04690 - O.I. H.G. S.X.
0.18 13.7 0.91 Os04g0177400 AK063474.1 - Riboflavin biosynthesis protein RibD familyprotein 1e+0 At5g38170 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.17 12.6 0.92 Os07g0516400 NM_187395.1 - Conserved hypothetical protein 2e+0 At5g27690 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.17 12.6 0.94 Os09g0464400 9637.m02554 - Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein 4e-16 At5g65450 UBP17 (UBIQUITIN-SPECIFIC PROTEASE 17) O.I. H.G. S.X.
0.15 10.3 0.92 Os09g0485500 AK119776.1 - Hypothetical protein 8e-14 At3g57670 NTT (NO TRANSMITTING TRACT) O.I. H.G. S.X.
0.15 10.3 0.73 Os11g0653300 AK119392.1 - Hypothetical protein 3e-2 At3g21710 unknown protein O.I. H.G. S.X.
0.13 8.2 0.95 Os09g0499300 9637.m02833 - - 8e-2 At2g39250 SNZ (SCHNARCHZAPFEN) O.I. H.G. S.X.
0.10 5.7 0.84 Os04g0383700 AK063211.1 - Conserved hypothetical protein 1e+0 At2g19310 - O.I. H.G. S.X.
0.07 3.7 0.92 Os12g0570300 AK108513.1 - Hypothetical protein 1e-1 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.0 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.3 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.6 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.9 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.080 1 GO:0015977 Any process by which inorganic carbon (usually carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
0.034 1 GO:0006418 The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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