CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0129800

Gene name
Homology with Arabidopsis Similar to At4g24240: WRKY7 (HF=5e-10)

Module size 6 genes

NF 0.50

%ile 66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.88 Os05g0129800 9633.m00316 - DNA-binding WRKY domain containing protein 5e-10 At4g24240 WRKY7 O.I. H.G. S.X.
0.73 91.1 0.88 Os04g0295500 AK065384.1 - Conserved hypothetical protein 4e-1 At1g65040 protein binding / zinc ion binding O.I. H.G. S.X.
0.60 79.7 0.90 Os07g0619400 AK062716.1 - Calcium-binding EF-hand domain containing protein 9e-2 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative O.I. H.G. S.X.
0.50 68.0 0.88 Os02g0178000 AK111625.1 - SNF1 related protein kinase-like protein 6e-11 At1g01140 CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) O.I. H.G. S.X.
0.40 51.1 0.89 Os08g0113500 AK071052.1 - No apical meristem (NAM) protein family protein 1e-3 At2g02450 ANAC035 (Arabidopsis NAC domain containing protein 35) O.I. H.G. S.X.
0.26 25.6 0.88 Os10g0556200 CB624216 - SPATULA 8e-3 At4g00050 UNE10 (unfertilized embryo sac 10) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.1 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.1 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.2 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.029 1 GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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