CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0126050

Gene name
Homology with Arabidopsis Similar to At5g47090: unknown protein (HF=1e-2)

Module size 6 genes

NF 0.63

%ile 85.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.98 Os05g0126050 9633.m00277 - - 1e-2 At5g47090 unknown protein O.I. H.G. S.X.
0.83 95.8 0.98 Os02g0649150 9630.m04166 - - 5e+0 At3g17100 transcription factor O.I. H.G. S.X.
0.67 87.2 0.98 Os01g0509966 NM_193748.1 - - 1e+0 At5g05580 FAD8 (FATTY ACID DESATURASE 8) O.I. H.G. S.X.
0.55 73.7 0.98 Os11g0269700 AK071998.1 - Conserved hypothetical protein 2e+0 At2g47670 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.48 63.7 0.98 Os05g0576850 9633.m04714 - - 1e-1 At2g40510 40S ribosomal protein S26 (RPS26A) O.I. H.G. S.X.
0.43 55.4 0.98 Os11g0648200 9639.m03950 - - 2e+0 At4g11870 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.2	0.98	Os05g0126050	9633.m00277	-	-	1e-2	At5g47090	unknown protein	O.I.	H.G.	S.X.
0.83	95.8	0.98	Os02g0649150	9630.m04166	-	-	5e+0	At3g17100	transcription factor	O.I.	H.G.	S.X.
0.67	87.2	0.98	Os01g0509966	NM_193748.1	-	-	1e+0	At5g05580	FAD8 (FATTY ACID DESATURASE 8)	O.I.	H.G.	S.X.
0.55	73.7	0.98	Os11g0269700	AK071998.1	-	Conserved hypothetical protein	2e+0	At2g47670	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.48	63.7	0.98	Os05g0576850	9633.m04714	-	-	1e-1	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.
0.43	55.4	0.98	Os11g0648200	9639.m03950	-	-	2e+0	At4g11870	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.2	0.97	Os09g0482300	AK108029.1	-	Conserved hypothetical protein	3e+0	At1g21770	-	O.I.	H.G.	S.X.
0.67	87.2	0.97	Os09g0351900	9637.m01570	-	-	6e-1	At5g62440	-	O.I.	H.G.	S.X.
0.67	87.2	0.98	Os06g0517650	9634.m03051	-	-	2e+0	At5g43650	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.60	79.7	0.98	Os06g0170100	9634.m00665	-	Protein kinase domain containing protein	3e-7	At1g48210	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os11g0163700	9639.m00576	-	-	4e+0	At5g66040	STR16 (SULFURTRANSFERASE PROTEIN 16)	O.I.	H.G.	S.X.
0.48	63.7	0.96	Os02g0562200	9630.m03375	-	-	4e+0	At5g05120	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.47	62.3	0.97	Os08g0526900	9636.m04217	-	-	3e-1	At5g12340	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.97	Os03g0803200	AK111283.1	-	Conserved hypothetical protein	2e-3	At3g28455	CLE25 (CLAVATA3/ESR-RELATED 25)	O.I.	H.G.	S.X.
0.44	58.1	0.97	Os03g0370200	9631.m02489	-	Protein of unknown function DUF537 family protein	1e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.98	Os04g0134300	9632.m00375	-	-	2e+0	At5g25420	xanthine/uracil permease family protein	O.I.	H.G.	S.X.
0.40	51.1	0.94	Os10g0489500	NM_197111.1	-	Terpene synthase-like domain containing protein	4e+0	At4g33140	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.97	Os08g0372100	9636.m02817	-	-	1e+1	Atmg01310	-	O.I.	H.G.	S.X.
0.40	51.1	0.98	Os05g0468200	AK105507.1	-	Conserved hypothetical protein	3e+0	At5g55610	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.98	Os01g0594700	NM_192609.1	-	Conserved hypothetical protein	2e-1	At1g33030	O-methyltransferase family 2 protein	O.I.	H.G.	S.X.
0.40	51.1	0.98	Os04g0347500	9632.m02642	-	-	9e-2	At3g21120	F-box family protein	O.I.	H.G.	S.X.
0.37	45.0	0.98	Os08g0526201	9636.m04208	-	-	8e-1	At2g17710	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.97	Os09g0324300	AK109691.1	-	Cyclin-like F-box domain containing protein	8e-1	At3g58850	PAR2 (PHY RAPIDLY REGULATED 2)	O.I.	H.G.	S.X.
0.34	40.0	0.97	Os03g0402233	9631.m02813	-	-	1e-1	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os08g0539200	AK109065.1	-	Conserved hypothetical protein	2e+0	At3g22820	allergen-related	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os04g0552900	9632.m04500	-	-	3e-1	At4g30410	transcription factor	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os01g0802400	9640.m01501	-	Conserved hypothetical protein	8e-1	At5g26110	ATP binding / catalytic/ protein kinase	O.I.	H.G.	S.X.
0.33	38.8	0.99	Os02g0491800	9630.m02768	-	Germin-like protein 3 (Fragment)	6e-6	At3g04200	germin-like protein, putative	O.I.	H.G.	S.X.
0.32	36.3	0.97	Os04g0189100	9632.m00985	-	-	3e+0	At5g39493	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os09g0106000	9637.m00031	-	-	5e+0	At5g15790	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os07g0654500	AK122088.1	-	Conserved hypothetical protein	9e-1	At3g16720	ATL2	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os11g0581000	9639.m03358	-	-	1e-1	At2g40240	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os01g0275100	9629.m01678	-	-	8e+0	At1g27330	-	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os01g0512100	9629.m03073	-	Altered Response to Gravity (ARG1 protein (AlteredResponse to Gravity) 32591-35072)	2e-41	At1g68370	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	O.I.	H.G.	S.X.
0.31	34.5	0.98	Os06g0165300	9634.m00627	-	Hypothetical protein	2e-4	At3g01500	CA1 (CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.
0.29	31.1	0.95	Os01g0899500	AK064490.1	-	Hypothetical protein	3e+0	At4g26180	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.
0.29	31.1	0.94	Os02g0499800	9630.m02831	-	-	2e-1	At4g09300	-	O.I.	H.G.	S.X.
0.29	31.1	0.96	Os03g0789600	AK106967.1	-	Conserved hypothetical protein	1e+0	At5g14730	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.98	Os05g0435300	9633.m03352	-	Protein of unknown function DUF1218 family protein	5e+0	At4g33720	pathogenesis-related protein, putative	O.I.	H.G.	S.X.
0.27	27.5	0.89	Os10g0187701	9638.m00964	-	-	1e-2	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.
0.27	27.5	0.97	Os02g0237200	9630.m01320	-	-	6e+0	At3g11745	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.97	Os06g0562700	AK109753.1	-	Conserved hypothetical protein	3e+0	At5g51440	23.5 kDa mitochondrial small heat shock protein (HSP23.5-M)	O.I.	H.G.	S.X.
0.27	27.5	0.97	Os06g0287400	9634.m01782	-	-	8e-1	At1g77710	-	O.I.	H.G.	S.X.
0.27	27.5	0.98	Os11g0302900	AK065382.1	-	The start codon is not identified.	6e-2	At1g35183	unknown protein	O.I.	H.G.	S.X.
0.26	25.6	0.94	Os01g0660000	AK064265.1	-	-	6e-1	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.
0.26	25.6	0.94	Os09g0513500	9637.m02916	-	Phosphatidylethanolamine-binding protein familyprotein	4e-4	At4g20370	TSF (TWIN SISTER OF FT)	O.I.	H.G.	S.X.
0.25	24.1	0.92	Os04g0128200	9632.m00296	-	-	1e+0	At1g70030	paired amphipathic helix repeat-containing protein	O.I.	H.G.	S.X.
0.25	24.1	0.93	Os02g0785200	9630.m05393	-	-	2e+0	At3g45540	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.25	24.1	0.96	Os12g0615200	AK119304.1	-	Hypothetical protein	6e+0	At5g25757	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	0.97	Os03g0837700	9631.m06138	-	Heat shock protein DnaJ, N-terminal domaincontaining protein	4e-4	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	O.I.	H.G.	S.X.
0.25	24.1	0.98	Os11g0162500	9633.m00870	-	-	2e-2	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.
0.25	24.1	0.98	Os08g0226000	9636.m01275	-	-	2e+0	At5g56550	OXS3 (OXIDATIVE STRESS 3)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.9 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
22.7 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.9 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.5 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
49.9	99.9	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
22.7	99.3	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.9	99.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.5	98.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4	98.2	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1	98.2	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8	98.1	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8	98.1	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os05g0126050
Gene name
Homology with Arabidopsis	Similar to At5g47090: unknown protein (HF=1e-2)
Module size	6 genes
NF	0.63
%ile	85.4

Co-expression analysis

Gene ID Os05g0126050 Gene name Homology with ArabidopsisSimilar to At5g47090: unknown protein (HF=1e-2) Module size 6 genes NF 0.63 %ile 85.4

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os05g0126050

Gene name
Homology with Arabidopsis Similar to At5g47090: unknown protein (HF=1e-2)

Module size 6 genes

NF 0.63

%ile 85.4

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays