CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0126050

Gene name
Homology with Arabidopsis Similar to At5g47090: unknown protein (HF=1e-2)

Module size 6 genes

NF 0.63

%ile 85.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.98 Os05g0126050 9633.m00277 - - 1e-2 At5g47090 unknown protein O.I. H.G. S.X.
0.83 95.8 0.98 Os02g0649150 9630.m04166 - - 5e+0 At3g17100 transcription factor O.I. H.G. S.X.
0.67 87.2 0.98 Os01g0509966 NM_193748.1 - - 1e+0 At5g05580 FAD8 (FATTY ACID DESATURASE 8) O.I. H.G. S.X.
0.55 73.7 0.98 Os11g0269700 AK071998.1 - Conserved hypothetical protein 2e+0 At2g47670 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.48 63.7 0.98 Os05g0576850 9633.m04714 - - 1e-1 At2g40510 40S ribosomal protein S26 (RPS26A) O.I. H.G. S.X.
0.43 55.4 0.98 Os11g0648200 9639.m03950 - - 2e+0 At4g11870 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.9 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
22.7 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.9 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.5 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1617980_at, orthologous to the query gene, Os05g0126050

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.6 1617980_at At5g47090 - - 8e-1 At5g66800 unknown protein O.I. H.G. S.X.
0.92 99.0 1611173_at At5g47090 hypothetical protein LOC100258969 - 1e+0 At3g25080 unknown protein O.I. H.G. S.X.
0.92 99.0 1614697_at At5g47090 hypothetical protein LOC100255962 - 5e+0 At5g07550 GRP19 (GLYCINE-RICH PROTEIN 19) O.I. H.G. S.X.
0.89 95.5 1610616_at At5g47090 hypothetical protein LOC100260773 /// hypothetical protein LOC100252365 - 5e-3 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) O.I. H.G. S.X.
0.87 95.2 1620137_s_at At5g47090 hypothetical protein LOC100260466 - 3e+0 At3g20510 unknown protein O.I. H.G. S.X.
0.87 95.2 1621346_at At5g47090 hypothetical protein LOC100263108 - 8e-2 At1g74440 unknown protein O.I. H.G. S.X.
0.85 94.9 1614771_at At5g47090 hypothetical protein LOC100242179 - 1e+0 At5g62200 embryo-specific protein-related O.I. H.G. S.X.
0.84 94.8 1615925_at At5g47090 hypothetical protein LOC100260124 - 3e-4 At4g10020 AtHSD5 (hydroxysteroid dehydrogenase 5) O.I. H.G. S.X.
0.82 93.9 1620307_at At5g47090 hypothetical protein LOC100264814 - 2e-10 At2g33380 RD20 (RESPONSIVE TO DESSICATION 20) O.I. H.G. S.X.
0.82 93.9 1613191_at At5g47090 hypothetical protein LOC100254511 - 8e-2 At3g20850 proline-rich family protein O.I. H.G. S.X.
0.80 93.6 1613161_at At5g47090 hypothetical protein LOC100257921 - 3e+0 At4g18860 unknown protein O.I. H.G. S.X.
0.78 92.6 1619031_at At5g47090 hypothetical protein LOC100266074 - 5e-10 At3g63140 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA) O.I. H.G. S.X.
0.74 91.0 1614711_at At5g47090 hypothetical protein LOC100240860 - 2e-1 At4g27580 unknown protein O.I. H.G. S.X.
0.74 91.0 1618312_at At5g47090 hypothetical protein LOC100240958 - 8e-2 At1g22540 proton-dependent oligopeptide transport (POT) family protein O.I. H.G. S.X.
0.74 91.0 1622225_at At5g47090 hypothetical protein LOC100249321 - 3e+0 At3g07425 unknown protein O.I. H.G. S.X.
0.65 85.0 1621723_at At5g47090 hypothetical protein LOC100248744 - 6e-14 At1g61110 anac025 (Arabidopsis NAC domain containing protein 25) O.I. H.G. S.X.
0.60 81.9 1619180_at At5g47090 hypothetical protein LOC100252897 - 2e-14 At1g17810 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) O.I. H.G. S.X.
0.59 80.6 1621786_at At5g47090 hypothetical protein LOC100249921 - 2e-3 At5g67490 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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