CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0126050

Gene name
Homology with Arabidopsis Similar to At5g47090: unknown protein (HF=1e-2)

Module size 6 genes

NF 0.63

%ile 85.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.98 Os05g0126050 9633.m00277 - - 1e-2 At5g47090 unknown protein O.I. H.G. S.X.
0.83 95.8 0.98 Os02g0649150 9630.m04166 - - 5e+0 At3g17100 transcription factor O.I. H.G. S.X.
0.67 87.2 0.98 Os01g0509966 NM_193748.1 - - 1e+0 At5g05580 FAD8 (FATTY ACID DESATURASE 8) O.I. H.G. S.X.
0.55 73.7 0.98 Os11g0269700 AK071998.1 - Conserved hypothetical protein 2e+0 At2g47670 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.48 63.7 0.98 Os05g0576850 9633.m04714 - - 1e-1 At2g40510 40S ribosomal protein S26 (RPS26A) O.I. H.G. S.X.
0.43 55.4 0.98 Os11g0648200 9639.m03950 - - 2e+0 At4g11870 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.9 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
22.7 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.9 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.5 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g47090, orthologous to the query gene, Os05g0126050

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.51 66.3 At5g47090 834755 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. H.G. S.X.
0.90 95.1 At1g74250 843765 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:intracellular;MOBFPVA O.I. H.G. S.X.
0.77 88.0 At3g02760 820930 ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding F:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAP O.I. H.G. S.X.
0.75 86.9 At3g06010 819772 ATCHR12 Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress. O.I. H.G. S.X.
0.65 79.6 At3g19650 821502 cyclin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. H.G. S.X.
0.65 79.6 At3g24490 822039 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFBV O.I. H.G. S.X.
0.65 79.6 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.64 78.9 At1g53720 841810 CYP59 (CYCLOPHILIN 59) Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis� trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR proteins in nuclear speckles. O.I. H.G. S.X.
0.64 78.9 At2g40650 818660 pre-mRNA splicing factor PRP38 family protein F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA O.I. H.G. S.X.
0.63 78.1 At1g18950 838476 aminoacyl-tRNA synthetase family F:aminoacyl-tRNA ligase activity;P:biological_process unknown;C:unknown;MOFBPVA O.I. H.G. S.X.
0.61 76.7 At5g61310 836252 cytochrome c oxidase subunit Vc, putative / COX5C, putative F:cytochrome-c oxidase activity;P:unknown;C:mitochondrial respiratory chain, endomembrane system;P O.I. H.G. S.X.
0.61 76.7 At2g06210 815177 ELF8 (EARLY FLOWERING 8) Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. O.I. H.G. S.X.
0.56 73.0 At5g55670 835661 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOFPVA O.I. H.G. S.X.
0.51 66.3 At2g29210 817470 splicing factor PWI domain-containing protein F:unknown;P:RNA splicing;C:unknown;MOFBPVA O.I. H.G. S.X.
0.51 66.3 At5g05210 830403 nucleolar matrix protein-related F:unknown;P:unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.50 65.3 At2g39260 818511 RNA binding / binding / protein binding F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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