CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0120700

Gene name
Homology with Arabidopsis Similar to At1g07810: ECA1 (ER-TYPE CA2+-ATPASE 1) (HF=2e-23)

Module size 6 genes

NF 0.21

%ile 18.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.91 Os05g0120700 AK062874.1 - Cation transporting ATPase, C-terminal domaincontaining protein 2e-23 At1g07810 ECA1 (ER-TYPE CA2+-ATPASE 1) O.I. H.G. S.X.
0.50 68.0 0.91 Os01g0734200 AK103747.1 - RbohAOsp (Fragment) 2e-31 At1g64060 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) O.I. H.G. S.X.
0.38 46.9 0.91 Os08g0424500 AK071221.1 - Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH) 2e-17 At1g74920 ALDH10A8 O.I. H.G. S.X.
0.17 12.6 0.93 Os10g0422000 AK063303.1 - Hypothetical protein 9e-4 At4g02710 kinase interacting family protein O.I. H.G. S.X.
0.17 12.6 0.92 Os07g0295800 CB674667 - Hypothetical protein 4e-1 At5g56980 unknown protein O.I. H.G. S.X.
0.05 2.5 0.91 Os06g0237300 AK102383.1 - Zn-binding protein, LIM domain containing protein 2e-3 At2g23320 WRKY15 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.8 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.4 96.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.286 1 GO:0031456 The chemical reactions and pathways resulting in the formation of glycine betaine, N-trimethylglycine.
0.054 1 GO:0006950 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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