CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0115700

Gene name
Homology with Arabidopsis Similar to At5g59740: UDP-galactose/UDP-glucose transporter-related (HF=1e-18)

Module size 35 genes

NF 0.47

%ile 60.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.90 97.1 0.94 Os05g0115700 AK070819.1 - Conserved hypothetical protein 1e-18 At5g59740 UDP-galactose/UDP-glucose transporter-related O.I. H.G. S.X.
0.61 81.2 0.96 Os09g0246700 AK121936.1 - Conserved hypothetical protein 3e+0 At5g55810 AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase) O.I. H.G. S.X.
0.56 76.3 0.95 Os10g0489800 AK108069.1 - - 7e-1 At2g46915 unknown protein O.I. H.G. S.X.
0.55 73.7 0.96 Os12g0109900 AB036988.1 - Double-stranded RNA binding domain containingprotein 6e-2 At2g28380 DRB2 (DSRNA-BINDING PROTEIN 2) O.I. H.G. S.X.
0.55 73.7 0.95 Os01g0286000 AK109824.1 - Snf7 family protein 7e-1 At1g16810 unknown protein O.I. H.G. S.X.
0.53 71.3 0.96 Os05g0102300 AK106387.1 - HAT dimerisation domain containing protein 1e+0 At4g25150 acid phosphatase, putative O.I. H.G. S.X.
0.53 71.3 0.95 Os06g0310200 CB096959 - Conserved hypothetical protein 1e-10 At4g15570 MAA3 (MAGATAMA 3) O.I. H.G. S.X.
0.53 71.3 0.95 Os06g0342600 AK110938.1 - Hypothetical protein 3e+0 At1g35290 thioesterase family protein O.I. H.G. S.X.
0.53 71.3 0.96 Os10g0564100 AK069258.1 - SOH1 family protein 4e-17 At5g19910 SOH1 family protein O.I. H.G. S.X.
0.52 69.6 0.95 Os01g0205100 AK121987.1 - Antigenic WD protein 6e-14 At5g45760 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.50 68.0 0.95 Os03g0718200 AK063808.1 - SWIM Zn-finger domain containing protein 4e-1 At3g57310 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.49 64.4 0.95 Os05g0158400 AK101233.1 - Peptidase, trypsin-like serine and cysteineproteases domain containing protein 3e+0 At5g28820 unknown protein O.I. H.G. S.X.
0.49 64.4 0.94 Os06g0724600 AK103177.1 - Transformer-SR ribonucleoprotein (Fragment) 5e-2 At4g35785 nucleic acid binding / nucleotide binding O.I. H.G. S.X.
0.48 63.7 0.96 Os06g0192500 AK067746.1 - ATP-dependent helicase, DEAH-box family protein 1e-6 At1g26370 RNA helicase, putative O.I. H.G. S.X.
0.48 63.7 0.96 Os05g0587400 AK063828.1 - contains InterPro domain(s): IPR010989 2e-7 At4g27620 unknown protein O.I. H.G. S.X.
0.48 63.7 0.96 Os05g0446500 AK099953.1 - Hypothetical protein 5e-1 At5g37230 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.47 62.3 0.96 Os06g0353400 AK120298.1 - Conserved hypothetical protein 2e+0 At5g13850 NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) O.I. H.G. S.X.
0.46 60.9 0.96 Os07g0471100 AK103840.1 - Nuclear protein SET domain containing protein 2e-1 At2g35430 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.46 60.9 0.96 Os02g0823800 AK120318.1 - - 1e-1 At2g42680 MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A) O.I. H.G. S.X.
0.46 60.9 0.95 Os12g0119700 AK072581.1 - Hypothetical protein 1e+0 At1g78340 ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22) O.I. H.G. S.X.
0.45 58.8 0.95 Os08g0278100 AK063626.1 - Conserved hypothetical protein 3e+0 At3g20480 tetraacyldisaccharide 4'-kinase family protein O.I. H.G. S.X.
0.44 58.1 0.95 Os08g0105000 AK069782.1 - Zn-finger-like, PHD finger domain containingprotein 1e-3 At1g77250 PHD finger family protein O.I. H.G. S.X.
0.43 55.4 0.96 Os01g0549500 AK070641.1 - Phox-like domain containing protein 1e-3 At3g48195 phox (PX) domain-containing protein O.I. H.G. S.X.
0.43 55.4 0.96 Os09g0572200 AK109639.1 - Conserved hypothetical protein 1e-3 At3g45090 2-phosphoglycerate kinase-related O.I. H.G. S.X.
0.42 53.9 0.95 Os10g0478600 AK073485.1 - Conserved hypothetical protein 3e-2 At5g08280 HEMC (HYDROXYMETHYLBILANE SYNTHASE) O.I. H.G. S.X.
0.42 53.9 0.95 Os04g0284500 AK119323.1 - Hypothetical protein 2e+0 At2g01540 C2 domain-containing protein O.I. H.G. S.X.
0.41 52.4 0.96 Os03g0180700 AK069776.1 - Conserved hypothetical protein 1e-6 At1g16570 glycosyl transferase family 1 protein O.I. H.G. S.X.
0.41 52.4 0.96 Os10g0363100 AK061910.1 - Glycosyltransferase QUASIMODO1 (EC 2.4.1.-) 3e-20 At4g38270 GAUT3 (Galacturonosyltransferase 3) O.I. H.G. S.X.
0.40 51.1 0.96 Os01g0687600 NM_192106.1 - Conserved hypothetical protein 1e-4 At3g48120 unknown protein O.I. H.G. S.X.
0.39 48.3 0.95 Os01g0934300 AK072640.1 - Flowering-time protein isoform beta 5e-4 At4g02560 LD (luminidependens) O.I. H.G. S.X.
0.38 46.9 0.96 Os08g0485600 AK064883.1 - Zn-finger, C2H2 type domain containing protein 2e+0 At3g60420 - O.I. H.G. S.X.
0.38 46.9 0.96 Os03g0240900 AK120108.1 - Tubulin/FtsZ, GTPase domain containing protein 4e-2 At1g19485 AT hook motif-containing protein O.I. H.G. S.X.
0.35 41.7 0.95 Os10g0493100 AK063145.1 - Fertility restorer 6e+0 At5g25240 - O.I. H.G. S.X.
0.29 31.1 0.95 Os01g0321800 AK064712.1 - Hypothetical protein 3e-8 At3g62140 unknown protein O.I. H.G. S.X.
0.28 31.1 0.96 Os03g0130800 AK058647.1 - Bromodomain containing protein 2e+0 At5g11740 AGP15 (ARABINOGALACTAN PROTEIN 15) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.90	97.1	0.94	Os05g0115700	AK070819.1	-	Conserved hypothetical protein	1e-18	At5g59740	UDP-galactose/UDP-glucose transporter-related	O.I.	H.G.	S.X.
0.61	81.2	0.96	Os09g0246700	AK121936.1	-	Conserved hypothetical protein	3e+0	At5g55810	AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase)	O.I.	H.G.	S.X.
0.56	76.3	0.95	Os10g0489800	AK108069.1	-	-	7e-1	At2g46915	unknown protein	O.I.	H.G.	S.X.
0.55	73.7	0.96	Os12g0109900	AB036988.1	-	Double-stranded RNA binding domain containingprotein	6e-2	At2g28380	DRB2 (DSRNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.
0.55	73.7	0.95	Os01g0286000	AK109824.1	-	Snf7 family protein	7e-1	At1g16810	unknown protein	O.I.	H.G.	S.X.
0.53	71.3	0.96	Os05g0102300	AK106387.1	-	HAT dimerisation domain containing protein	1e+0	At4g25150	acid phosphatase, putative	O.I.	H.G.	S.X.
0.53	71.3	0.95	Os06g0310200	CB096959	-	Conserved hypothetical protein	1e-10	At4g15570	MAA3 (MAGATAMA 3)	O.I.	H.G.	S.X.
0.53	71.3	0.95	Os06g0342600	AK110938.1	-	Hypothetical protein	3e+0	At1g35290	thioesterase family protein	O.I.	H.G.	S.X.
0.53	71.3	0.96	Os10g0564100	AK069258.1	-	SOH1 family protein	4e-17	At5g19910	SOH1 family protein	O.I.	H.G.	S.X.
0.52	69.6	0.95	Os01g0205100	AK121987.1	-	Antigenic WD protein	6e-14	At5g45760	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.50	68.0	0.95	Os03g0718200	AK063808.1	-	SWIM Zn-finger domain containing protein	4e-1	At3g57310	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.49	64.4	0.95	Os05g0158400	AK101233.1	-	Peptidase, trypsin-like serine and cysteineproteases domain containing protein	3e+0	At5g28820	unknown protein	O.I.	H.G.	S.X.
0.49	64.4	0.94	Os06g0724600	AK103177.1	-	Transformer-SR ribonucleoprotein (Fragment)	5e-2	At4g35785	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.
0.48	63.7	0.96	Os06g0192500	AK067746.1	-	ATP-dependent helicase, DEAH-box family protein	1e-6	At1g26370	RNA helicase, putative	O.I.	H.G.	S.X.
0.48	63.7	0.96	Os05g0587400	AK063828.1	-	contains InterPro domain(s): IPR010989	2e-7	At4g27620	unknown protein	O.I.	H.G.	S.X.
0.48	63.7	0.96	Os05g0446500	AK099953.1	-	Hypothetical protein	5e-1	At5g37230	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.47	62.3	0.96	Os06g0353400	AK120298.1	-	Conserved hypothetical protein	2e+0	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.
0.46	60.9	0.96	Os07g0471100	AK103840.1	-	Nuclear protein SET domain containing protein	2e-1	At2g35430	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.
0.46	60.9	0.96	Os02g0823800	AK120318.1	-	-	1e-1	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	O.I.	H.G.	S.X.
0.46	60.9	0.95	Os12g0119700	AK072581.1	-	Hypothetical protein	1e+0	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	O.I.	H.G.	S.X.
0.45	58.8	0.95	Os08g0278100	AK063626.1	-	Conserved hypothetical protein	3e+0	At3g20480	tetraacyldisaccharide 4'-kinase family protein	O.I.	H.G.	S.X.
0.44	58.1	0.95	Os08g0105000	AK069782.1	-	Zn-finger-like, PHD finger domain containingprotein	1e-3	At1g77250	PHD finger family protein	O.I.	H.G.	S.X.
0.43	55.4	0.96	Os01g0549500	AK070641.1	-	Phox-like domain containing protein	1e-3	At3g48195	phox (PX) domain-containing protein	O.I.	H.G.	S.X.
0.43	55.4	0.96	Os09g0572200	AK109639.1	-	Conserved hypothetical protein	1e-3	At3g45090	2-phosphoglycerate kinase-related	O.I.	H.G.	S.X.
0.42	53.9	0.95	Os10g0478600	AK073485.1	-	Conserved hypothetical protein	3e-2	At5g08280	HEMC (HYDROXYMETHYLBILANE SYNTHASE)	O.I.	H.G.	S.X.
0.42	53.9	0.95	Os04g0284500	AK119323.1	-	Hypothetical protein	2e+0	At2g01540	C2 domain-containing protein	O.I.	H.G.	S.X.
0.41	52.4	0.96	Os03g0180700	AK069776.1	-	Conserved hypothetical protein	1e-6	At1g16570	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.
0.41	52.4	0.96	Os10g0363100	AK061910.1	-	Glycosyltransferase QUASIMODO1 (EC 2.4.1.-)	3e-20	At4g38270	GAUT3 (Galacturonosyltransferase 3)	O.I.	H.G.	S.X.
0.40	51.1	0.96	Os01g0687600	NM_192106.1	-	Conserved hypothetical protein	1e-4	At3g48120	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	0.95	Os01g0934300	AK072640.1	-	Flowering-time protein isoform beta	5e-4	At4g02560	LD (luminidependens)	O.I.	H.G.	S.X.
0.38	46.9	0.96	Os08g0485600	AK064883.1	-	Zn-finger, C2H2 type domain containing protein	2e+0	At3g60420	-	O.I.	H.G.	S.X.
0.38	46.9	0.96	Os03g0240900	AK120108.1	-	Tubulin/FtsZ, GTPase domain containing protein	4e-2	At1g19485	AT hook motif-containing protein	O.I.	H.G.	S.X.
0.35	41.7	0.95	Os10g0493100	AK063145.1	-	Fertility restorer	6e+0	At5g25240	-	O.I.	H.G.	S.X.
0.29	31.1	0.95	Os01g0321800	AK064712.1	-	Hypothetical protein	3e-8	At3g62140	unknown protein	O.I.	H.G.	S.X.
0.28	31.1	0.96	Os03g0130800	AK058647.1	-	Bromodomain containing protein	2e+0	At5g11740	AGP15 (ARABINOGALACTAN PROTEIN 15)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.2 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.5 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.3 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
27.2	99.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
25.5	99.5	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.3	97.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2	97.7	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0	97.6	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9	97.6	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7	97.6	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5	97.5	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3	97.5	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3	97.5	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.033 1 GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
0.012 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.033	1	GO:0007242	A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
0.012	1	GO:0009058	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os05g0115700
Gene name
Homology with Arabidopsis	Similar to At5g59740: UDP-galactose/UDP-glucose transporter-related (HF=1e-18)
Module size	35 genes
NF	0.47
%ile	60.9

Co-expression analysis

Gene ID Os05g0115700 Gene name Homology with ArabidopsisSimilar to At5g59740: UDP-galactose/UDP-glucose transporter-related (HF=1e-18) Module size 35 genes NF 0.47 %ile 60.9

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os05g0115700

Gene name
Homology with Arabidopsis Similar to At5g59740: UDP-galactose/UDP-glucose transporter-related (HF=1e-18)

Module size 35 genes

NF 0.47

%ile 60.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays