CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0114500

Gene name
Homology with Arabidopsis Similar to At5g18362: unknown protein (HF=2e-1)

Module size 6 genes

NF 0.59

%ile 79.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.91 Os05g0114500 9633.m00159 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-1 At5g18362 unknown protein O.I. H.G. S.X.
0.73 91.1 0.91 Os07g0654300 AK121908.1 - Conserved hypothetical protein 1e+1 At3g15640 cytochrome c oxidase family protein O.I. H.G. S.X.
0.50 68.0 0.92 Os09g0437900 AK107833.1 - Adrenodoxin 9e-24 At4g05450 adrenodoxin-like ferredoxin 2 O.I. H.G. S.X.
0.50 68.0 0.94 Os11g0423800 AK064691.1 - Mitochondrial basic amino acid carrier 4e-9 At2g33820 MBAC1 O.I. H.G. S.X.
0.36 44.0 0.91 Os11g0593700 AK106617.1 - Cyclin-like F-box domain containing protein 1e+0 At1g70000 DNA-binding family protein O.I. H.G. S.X.
0.35 41.7 0.92 Os11g0265000 AK103877.1 - Uridine kinase family protein 1e-55 At4g26510 ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
60.0 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
46.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
33.2 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.8 99.5 GSM357135 14-day-old seedling, heat shock, rep 1 GSE14275 Expression data for heat shock in rice seedlings
24.4 99.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.3 99.1 GSM357136 14-day-old seedling, heat shock, rep 2 GSE14275 Expression data for heat shock in rice seedlings
12.1 98.3 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
9.8 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
6.6 97.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0009168 The chemical reactions and pathways resulting in the formation of purine ribonucleoside monophosphate, a glycosamine consisting of a purine base linked to a ribose sugar esterified with phosphate on its glycose moiety.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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