CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0113300

Gene name
Homology with Arabidopsis Similar to At3g53720: ATCHX20 (CATION/H+ EXCHANGER 20) (HF=4e-4)

Module size 6 genes

NF 0.16

%ile 13.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.97 Os05g0113300 AK106443.1 - Conserved hypothetical protein 4e-4 At3g53720 ATCHX20 (CATION/H+ EXCHANGER 20) O.I. H.G. S.X.
0.40 51.1 0.97 Os10g0117200 9638.m00184 - - 5e+0 At5g51451 unknown protein O.I. H.G. S.X.
0.35 41.7 0.97 Os06g0561100 CB622963 - - 8e-1 At3g44380 - O.I. H.G. S.X.
0.31 34.5 0.97 Os11g0644500 9639.m03915 - Transferase family protein 3e+0 At1g28450 AGL58 (AGAMOUS-LIKE 58) O.I. H.G. S.X.
0.27 27.5 0.97 Os01g0363600 NM_194015.1 - Hydroxyethylthiazole kinase, monofunctional familyprotein 7e+0 At5g02120 OHP (ONE HELIX PROTEIN) O.I. H.G. S.X.
0.05 2.5 0.97 Os02g0738300 AK108113.1 - Conserved hypothetical protein 1e-1 At4g14695 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	79.7	0.97	Os07g0112100	9635.m00120	-	Dimethylaniline monooxygenase-like protein	3e+0	At5g19875	unknown protein	O.I.	H.G.	S.X.
0.59	78.0	0.94	Os08g0321600	AK060315.1	-	Conserved hypothetical protein	2e-3	At5g27690	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.55	73.7	0.94	Os02g0823900	9630.m05764	-	-	2e+0	At4g24026	unknown protein	O.I.	H.G.	S.X.
0.43	55.4	0.96	Os01g0706800	9629.m04944	-	Jacalin-related lectin domain containing protein	4e-1	At1g22270	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.94	Os01g0620300	9629.m04162	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	2e-7	At1g22360	AtUGT85A2 (UDP-glucosyl transferase 85A2)	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os01g0731300	9629.m05162	-	-	3e+0	At2g18162	CPuORF1 (Conserved peptide upstream open reading frame 1)	O.I.	H.G.	S.X.
0.25	24.1	0.96	Os03g0338800	AK064660.1	-	Helix-turn-helix, Fis-type domain containingprotein	1e+0	At2g31150	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	O.I.	H.G.	S.X.
0.23	21.2	0.97	Os11g0291000	9639.m01728	-	Beta-D-xylosidase	2e-2	At1g07730	-	O.I.	H.G.	S.X.
0.21	17.9	0.95	Os10g0558150	9638.m03713	-	-	1e-1	At4g16640	matrix metalloproteinase, putative	O.I.	H.G.	S.X.
0.20	16.5	0.97	Os01g0680600	NM_192046.1	-	-	1e-1	At5g23100	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.7 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.6 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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