Co-expression analysis

Gene ID Os05g0110100
Gene name
Homology with ArabidopsisSimilar to At2g40970: myb family transcription factor (HF=4e-1)
Module size 23 genes
NF 0.77
%ile 97.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.60.96Os05g0110100AK121142.1-Conserved hypothetical protein4e-1At2g40970myb family transcription factorO.I.H.G.S.X.
0.8696.40.97Os07g0544800AK069170.1-Oxygen-evolving enhancer protein 3-2, chloroplastprecursor (OEE3) (16 kDa subunit of oxygen evolvingsystem of photosystem II) (OEC 16 kDa subunit)(Ferredoxin-NADP reductase binding protein) (BP)1e-4At4g21280oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)O.I.H.G.S.X.
0.8596.10.97Os01g0773700AK119225.1-Photosystem II reaction center W protein (PSII 6.1kDa protein) (Fragment)9e-13At5g66005Expressed proteinO.I.H.G.S.X.
0.8496.00.97Os04g0414700AK058848.1-Conserved hypothetical protein3e-5At1g08380PSAO (photosystem I subunit O)O.I.H.G.S.X.
0.8395.80.97Os12g0274700AF017364.1-Ribulose-1,5-bisphosphate carboxylase/oxygenasesmall subunit (Fragment)9e-9At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.
0.8295.00.97Os08g0435900AY445626.1-Lhca4 protein,Type 4 protein of light-harvestingcomplex of photosystem I precursor (Fragment)1e-8At3g47470LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)O.I.H.G.S.X.
0.8295.00.97Os07g0141400AF022732.1-23 kDa polypeptide of photosystem II2e-13At1g06680PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)O.I.H.G.S.X.
0.8295.00.97Os12g0291100CB669997-Ribulose bisphosphate carboxylase, small chainfamily protein9e-6At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.
0.8194.80.96Os02g0197600AK106085.1-Chlorophyll a/b-binding protein type III(Fragment)1e-14At1g61520LHCA3O.I.H.G.S.X.
0.8094.60.97Os03g0778100AK060493.1-Photosystem I reaction center subunit III,chloroplast precursor (Light-harvesting complex I 17 kDaprotein) (PSI-F)6e-7At1g31330PSAF (photosystem I subunit F)O.I.H.G.S.X.
0.7993.60.97Os06g0320500AF094776.1-Chlorophyll a/b-binding protein4e-9At3g54890LHCA1O.I.H.G.S.X.
0.7793.10.96Os08g0200300U86018.1-Photosystem II 10 kDa polypeptide, chloroplastprecursor2e-5At1g79040PSBR (photosystem II subunit R)O.I.H.G.S.X.
0.7793.10.97Os07g0148900AK058788.1-Photosystem I reaction center subunit psaK,chloroplast precursor (Photosystem I subunit X) (PSI-K)(Light-harvesting complex I 7 kDa protein)4e-10At1g30380PSAK (photosystem I subunit K)O.I.H.G.S.X.
0.7793.10.97Os08g0560900AK072473.1-Photosystem I reaction center subunit II,chloroplast precursor (Photosystem I 20 kDa subunit)(PSI-D)2e-6At4g02770PSAD-1 (photosystem I subunit D-1)O.I.H.G.S.X.
0.7491.40.97Os06g0316800AK062370.1-Glycine-rich protein (Fragment)2e+0At5g40490RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.7391.10.97Os11g0171300CB662296-Fructose-bisphosphate aldolase, chloroplastprecursor (EC 4.1.2.13) (ALDP)5e-33At4g38970fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.7391.10.98Os07g0435300AK120598.1-Photosystem I reaction center subunit IV,chloroplast precursor (PSI- E) (Photosystem I 10.8 kDapolypeptide)4e-9At2g20260PSAE-2 (photosystem I subunit E-2)O.I.H.G.S.X.
0.7189.60.97Os12g0291400CB682251-Ribulose-1,5-bisphosphate carboxylase/oxygenasesmall subunit (Fragment)4e-5At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.
0.7189.60.97Os08g0119800AK060602.1--3e-2At2g33510protein bindingO.I.H.G.S.X.
0.6787.20.97Os07g0556200AF093631.1-Rieske FeS protein precursor6e-4At4g03280PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)O.I.H.G.S.X.
0.6683.90.96Os12g0575000AK104945.1-Protein of unknown function DUF1118 family protein2e+0At4g11020unknown proteinO.I.H.G.S.X.
0.6583.80.97Os02g05811009630.m03544-Conserved hypothetical protein1e+0At3g06160transcriptional factor B3 family proteinO.I.H.G.S.X.
0.6079.70.97Os06g0264800AK105959.1--3e-2At4g01150unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.898.6GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
10.298.0GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.298.0GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.898.0GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.497.9GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.297.9GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2224GO:0015979The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.Link to AmiGO
0.1713GO:0009765Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.Link to AmiGO
0.1252GO:0015977Any process by which inorganic carbon (usually carbon dioxide) is incorporated into organic compounds (usually carbohydrates).Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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