CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0689500

Gene name
Homology with Arabidopsis Similar to At5g60615: - (HF=7e-1)

Module size 12 genes

NF 0.77

%ile 97.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.79 93.6 0.92 Os04g0689500 AK060983.1 - Conserved hypothetical protein 7e-1 At5g60615 - O.I. H.G. S.X.
0.86 96.4 0.96 Os05g0176100 AK067850.1 - Cellulose synthase-1 3e-82 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) O.I. H.G. S.X.
0.82 95.0 0.95 Os05g0563600 AK099313.1 - Beta-Ig-H3/fasciclin domain containing protein 6e-1 At5g09310 unknown protein O.I. H.G. S.X.
0.82 95.0 0.96 Os05g0386800 AK070472.1 - - 2e-17 At5g60920 COB (COBRA) O.I. H.G. S.X.
0.82 95.0 0.96 Os09g0494200 AK069564.1 - Glycoside hydrolase, family 19 protein 4e-6 At3g16920 chitinase O.I. H.G. S.X.
0.74 91.4 0.95 Os05g0123100 AK120892.1 - Glycosyl transferase, family 43 protein 6e-2 At1g66890 - O.I. H.G. S.X.
0.74 91.4 0.96 Os07g0462200 AK059964.1 - Protein of unknown function DUF1218 family protein 3e-2 At1g13380 unknown protein O.I. H.G. S.X.
0.72 89.8 0.94 Os04g0650300 AK062726.1 - - 5e+0 At1g63410 unknown protein O.I. H.G. S.X.
0.69 87.9 0.95 Os09g0533900 AK100449.1 - Endo-beta-1,4-glucanase (EC 3.2.1.4) (Fragment) 2e-8 At1g75680 AtGH9B7 (Arabidopsis thaliana glycosyl hydrolase 9B7) O.I. H.G. S.X.
0.67 87.2 0.95 Os03g0736300 AK070408.1 - Endo-1,4-beta-glucanase (EC 3.2.1.4) 1e-9 At4g24260 ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3) O.I. H.G. S.X.
0.67 87.2 0.95 Os07g0208500 AK072356.1 - Cellulose synthase-4 3e-82 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) O.I. H.G. S.X.
0.61 81.2 0.95 Os08g0321000 AK068096.1 - Beta-Ig-H3/fasciclin domain containing protein 2e-1 At4g35950 ARAC6 (ARABIDOPSIS RAC-LIKE 6) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
65.0 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.8 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.0 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.125 2 GO:0030244 The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
0.121 2 GO:0007155 The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
0.053 1 GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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