CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0688600

Gene name
Homology with Arabidopsis Similar to At5g40150: peroxidase, putative (HF=3e-1)

Module size 24 genes

NF 0.38

%ile 43.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.85 96.1 0.98 Os04g0688600 AK070680.1 - Anionic peroxidase precursor 3e-1 At5g40150 peroxidase, putative O.I. H.G. S.X.
0.62 81.5 0.98 Os07g0634000 CA766618 - DedA domain containing protein 2e-4 At2g02370 - O.I. H.G. S.X.
0.55 73.7 0.98 Os01g0969600 NM_189440.1 - - 8e-1 At1g72645 unknown protein O.I. H.G. S.X.
0.54 71.9 0.98 Os04g0414800 9632.m03247 - TPR-like domain containing protein 9e-7 At3g18970 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.49 64.4 0.98 Os08g0458900 9636.m03588 - - 2e+0 At4g02040 unknown protein O.I. H.G. S.X.
0.47 62.3 0.98 Os06g0552000 9634.m03396 - - 6e-2 At1g26970 protein kinase, putative O.I. H.G. S.X.
0.44 58.1 0.98 Os02g0210400 9630.m01076 - - 2e-2 At5g61660 glycine-rich protein O.I. H.G. S.X.
0.41 52.4 0.98 Os07g0533700 NM_185837.1 - - 5e+0 At5g01610 unknown protein O.I. H.G. S.X.
0.41 52.4 0.98 Os02g0671800 AK107580.1 - Hypothetical protein 9e-2 At2g02180 TOM3 O.I. H.G. S.X.
0.40 51.1 0.99 Os01g0142500 NM_184317.1 - Myb, DNA-binding domain containing protein 2e-15 At5g58900 myb family transcription factor O.I. H.G. S.X.
0.38 46.9 0.99 Os04g0152000 9632.m00594 - - 2e-4 At5g45530 unknown protein O.I. H.G. S.X.
0.37 45.0 0.98 Os03g0703700 9631.m04847 - - 2e-3 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.36 44.0 0.99 Os08g0211300 9636.m01063 - - 4e+0 At5g48420 unknown protein O.I. H.G. S.X.
0.36 44.0 0.98 Os05g0299000 AK108720.1 - - 6e+0 At5g66580 unknown protein O.I. H.G. S.X.
0.35 41.7 0.99 Os07g0692800 9635.m04977 - Protein synthesis initiation factor eIF2 alpha 3e-21 At2g40290 eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative O.I. H.G. S.X.
0.34 40.0 0.99 Os05g0591450 9633.m04845 - - 3e+0 At1g22790 unknown protein O.I. H.G. S.X.
0.33 38.8 0.98 Os11g0158300 AK070475.1 - Protein prenyltransferase domain containingprotein 1e+0 At5g14850 mannosyltransferase, putative O.I. H.G. S.X.
0.33 38.8 0.98 Os05g0249900 9633.m01433 - Conserved hypothetical protein 4e-2 At3g23255 unknown protein O.I. H.G. S.X.
0.32 36.3 0.99 Os06g0475900 9634.m02688 - - 8e-1 At5g09550 RAB GDP-dissociation inhibitor O.I. H.G. S.X.
0.31 34.5 0.99 Os03g0686300 9631.m04684 - Myosin head, motor region domain containingprotein 3e-52 At5g20490 XIK O.I. H.G. S.X.
0.25 24.1 0.98 Os06g0162100 9634.m00598 - Protein of unknown function DUF569 family protein 2e+0 At3g02000 ROXY1 O.I. H.G. S.X.
0.21 17.9 0.99 Os09g0552900 9637.m03239 - No apical meristem (NAM) protein family protein 3e-5 At3g17730 anac057 (Arabidopsis NAC domain containing protein 57) O.I. H.G. S.X.
0.19 15.1 0.98 Os01g0301700 AK100563.1 - TPR-like domain containing protein 5e+0 At5g02780 In2-1 protein, putative O.I. H.G. S.X.
0.15 10.3 0.98 Os02g0308200 9630.m01963 - - 4e+0 At2g01240 reticulon family protein (RTNLB15) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.85	96.1	0.98	Os04g0688600	AK070680.1	-	Anionic peroxidase precursor	3e-1	At5g40150	peroxidase, putative	O.I.	H.G.	S.X.
0.62	81.5	0.98	Os07g0634000	CA766618	-	DedA domain containing protein	2e-4	At2g02370	-	O.I.	H.G.	S.X.
0.55	73.7	0.98	Os01g0969600	NM_189440.1	-	-	8e-1	At1g72645	unknown protein	O.I.	H.G.	S.X.
0.54	71.9	0.98	Os04g0414800	9632.m03247	-	TPR-like domain containing protein	9e-7	At3g18970	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.49	64.4	0.98	Os08g0458900	9636.m03588	-	-	2e+0	At4g02040	unknown protein	O.I.	H.G.	S.X.
0.47	62.3	0.98	Os06g0552000	9634.m03396	-	-	6e-2	At1g26970	protein kinase, putative	O.I.	H.G.	S.X.
0.44	58.1	0.98	Os02g0210400	9630.m01076	-	-	2e-2	At5g61660	glycine-rich protein	O.I.	H.G.	S.X.
0.41	52.4	0.98	Os07g0533700	NM_185837.1	-	-	5e+0	At5g01610	unknown protein	O.I.	H.G.	S.X.
0.41	52.4	0.98	Os02g0671800	AK107580.1	-	Hypothetical protein	9e-2	At2g02180	TOM3	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os01g0142500	NM_184317.1	-	Myb, DNA-binding domain containing protein	2e-15	At5g58900	myb family transcription factor	O.I.	H.G.	S.X.
0.38	46.9	0.99	Os04g0152000	9632.m00594	-	-	2e-4	At5g45530	unknown protein	O.I.	H.G.	S.X.
0.37	45.0	0.98	Os03g0703700	9631.m04847	-	-	2e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os08g0211300	9636.m01063	-	-	4e+0	At5g48420	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.98	Os05g0299000	AK108720.1	-	-	6e+0	At5g66580	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.99	Os07g0692800	9635.m04977	-	Protein synthesis initiation factor eIF2 alpha	3e-21	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	O.I.	H.G.	S.X.
0.34	40.0	0.99	Os05g0591450	9633.m04845	-	-	3e+0	At1g22790	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os11g0158300	AK070475.1	-	Protein prenyltransferase domain containingprotein	1e+0	At5g14850	mannosyltransferase, putative	O.I.	H.G.	S.X.
0.33	38.8	0.98	Os05g0249900	9633.m01433	-	Conserved hypothetical protein	4e-2	At3g23255	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	0.99	Os06g0475900	9634.m02688	-	-	8e-1	At5g09550	RAB GDP-dissociation inhibitor	O.I.	H.G.	S.X.
0.31	34.5	0.99	Os03g0686300	9631.m04684	-	Myosin head, motor region domain containingprotein	3e-52	At5g20490	XIK	O.I.	H.G.	S.X.
0.25	24.1	0.98	Os06g0162100	9634.m00598	-	Protein of unknown function DUF569 family protein	2e+0	At3g02000	ROXY1	O.I.	H.G.	S.X.
0.21	17.9	0.99	Os09g0552900	9637.m03239	-	No apical meristem (NAM) protein family protein	3e-5	At3g17730	anac057 (Arabidopsis NAC domain containing protein 57)	O.I.	H.G.	S.X.
0.19	15.1	0.98	Os01g0301700	AK100563.1	-	TPR-like domain containing protein	5e+0	At5g02780	In2-1 protein, putative	O.I.	H.G.	S.X.
0.15	10.3	0.98	Os02g0308200	9630.m01963	-	-	4e+0	At2g01240	reticulon family protein (RTNLB15)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.6 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.4 99.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.5 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
25.6	99.5	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
24.4	99.4	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.5	98.8	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3	98.7	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4	98.6	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4	98.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3	98.6	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2	98.5	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9	98.5	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9	98.5	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.018 1 GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.018	1	GO:0006979	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os04g0688600
Gene name
Homology with Arabidopsis	Similar to At5g40150: peroxidase, putative (HF=3e-1)
Module size	24 genes
NF	0.38
%ile	43.9

Co-expression analysis

Gene ID Os04g0688600 Gene name Homology with ArabidopsisSimilar to At5g40150: peroxidase, putative (HF=3e-1) Module size 24 genes NF 0.38 %ile 43.9

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os04g0688600

Gene name
Homology with Arabidopsis Similar to At5g40150: peroxidase, putative (HF=3e-1)

Module size 24 genes

NF 0.38

%ile 43.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays