Co-expression analysis

Gene ID Os04g0685300
Gene name
Homology with ArabidopsisSimilar to At2g24440: selenium binding (HF=1e-1)
Module size 6 genes
NF 0.56
%ile 75.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.60.92Os04g0685300AF039532.1-Harpin-induced 1 domain containing protein1e-1At2g24440selenium bindingO.I.H.G.S.X.
0.6382.70.92Os01g0934100AK100995.1-C2 domain containing protein7e-1At5g62720integral membrane HPP family proteinO.I.H.G.S.X.
0.5371.30.91Os03g0764100AF332876.1-Conserved hypothetical protein6e-1At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)O.I.H.G.S.X.
0.4762.30.92Os05g0497300AK111755.1-Ethylene responsive element binding factor 5(AtERF5)4e-14At3g15210ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)O.I.H.G.S.X.
0.4051.10.92Os03g0787000AK065950.1-Syntaxin1e-2At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)O.I.H.G.S.X.
0.3644.00.93Os01g0949300AK072758.1-Calcium-binding EF-hand domain containing protein5e-1At1g05300ZIP5O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.098.3GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.696.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.696.9GSM409427Nipponbare_young panicle 2cm, biological rep3GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
5.496.8GSM159191Young inflorescence (P1, upto 3 cm), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
5.396.7GSM429982Rice wild-type panicle rep1GSE17194Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicleLink to GEO
5.296.7GSM409421Nipponbare_young panicle 2cm, biological rep1GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
5.296.7GSM159190Young inflorescence (P1, upto 3 cm), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
5.296.7GSM159189Young inflorescence (P1, upto 3 cm), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
4.996.5GSM4094329311_young panicle 2cm, biological rep3GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
4.996.5GSM409422Nipponbare_young panicle 2cm, biological rep2GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0201GO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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