Co-expression analysis

Gene ID Os04g0684300
Gene name
Homology with ArabidopsisSimilar to Atcg00560: - (HF=2e+1)
Module size 6 genes
NF 0.64
%ile 86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.92Os04g0684300AK105205.1-Hypothetical protein2e+1Atcg00560-O.I.H.G.S.X.
0.6181.20.92Os04g0423800AK108989.1-Peroxidase precursor (EC 1.11.1.7)3e-3At1g44970peroxidase, putativeO.I.H.G.S.X.
0.5978.00.92Os03g0245500AK064707.1-Curculin-like (mannose-binding) lectin domaincontaining protein1e+1At5g53560CB5-E (CYTOCHROME B5 ISOFORM E)O.I.H.G.S.X.
0.5573.70.93Os07g01930009635.m00915-HIPL1 protein precursor3e-1At5g62630HIPL2 (HIPL2 PROTEIN PRECURSOR)O.I.H.G.S.X.
0.4762.30.92Os07g0421300AK121014.1-Glycoside hydrolase, family 31 protein7e-15At3g23640HGL1 (heteroglycan glucosidase 1)O.I.H.G.S.X.
0.4458.10.93Os05g0276500U30479.1-Expansin Os-EXPA35e-1At2g39700ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
41.899.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.798.0GSM429984Rice wild-type panicle rep2GSE17194Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicleLink to GEO
9.097.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.697.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM159198Inflorescence (P4, 10 - 15 cm), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
8.297.7GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
8.297.7GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.197.7GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.797.6GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.697.5GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0221GO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.11372.1.A1_at, orthologous to the query gene, Os04g0684300

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9699.8Zm.11372.1.A1_atAtcg00560--1e+0At1g14160integral membrane family proteinO.I.H.G.S.X.
0.5875.1Zm.898.1.A1_a_atAtcg00560--1e+0At3g02730TRXF1 (THIOREDOXIN F-TYPE 1)O.I.H.G.S.X.
0.5571.6Zm.13376.1.S1_s_atAtcg00560plasma-membrane H+ATPase2 /// proton-exporting ATPase-2e-95At4g30190AHA2O.I.H.G.S.X.
0.5469.8Zm.10261.1.S1_atAtcg00560--1e-17At3g47460ATSMC2O.I.H.G.S.X.
0.5369.1Zm.5776.1.A1_atAtcg00560hypothetical protein LOC100273913-9e-2At2g47140short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5369.1Zm.17537.1.S1_atAtcg00560--9e-1At5g04120phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.5267.3Zm.12510.1.S1_atAtcg00560--5e+0At1g76955Expressed proteinO.I.H.G.S.X.
0.5166.4Zm.4242.1.S1_atAtcg00560--9e-2At3g57240BG3 (BETA-1,3-GLUCANASE 3)O.I.H.G.S.X.
0.5166.4Zm.2770.1.A1_atAtcg00560hypothetical protein LOC100192561-1e+0At2g17860pathogenesis-related thaumatin family proteinO.I.H.G.S.X.
0.5065.7Zm.11954.1.A1_atAtcg00560hypothetical protein LOC100216665-1e+0At4g19590DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.4961.9Zm.13987.1.A1_atAtcg00560--1e-21At5g13030unknown proteinO.I.H.G.S.X.
0.4961.9Zm.5860.4.A1_a_atAtcg00560mitochondrial-processing peptidase beta subunit-3e+0At4g19910Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.4861.3Zm.7765.1.A1_atAtcg00560--3e-1At1g53170ERF8O.I.H.G.S.X.
0.4759.9Zm.19356.1.A1_atAtcg00560--5e+0At3g27590unknown proteinO.I.H.G.S.X.
0.4556.4Zm.3161.1.S1_atAtcg00560hypothetical protein LOC100273395-3e-6At2g35190NPSN11 (NOVEL PLANT SNARE 11)O.I.H.G.S.X.
0.4556.4Zm.2267.2.S1_atAtcg00560hypothetical protein LOC100216854-6e+0At4g14740phosphoinositide bindingO.I.H.G.S.X.
0.4455.7Zm.19215.2.S1_atAtcg00560--2e-12At1g30480DRT111O.I.H.G.S.X.
0.4352.8Zm.8946.1.A1_atAtcg00560Guanylyl cyclase-like protein-7e-4At5g05930guanylyl cyclase-related (GC1)O.I.H.G.S.X.
0.4352.8Zm.5851.14.A1_atAtcg00560--9e-2At1g75270DHAR2 (DEHYDROASCORBATE REDUCTASE 2)O.I.H.G.S.X.
0.4251.3Zm.1402.1.S1_atAtcg00560--4e+0At1g29040unknown proteinO.I.H.G.S.X.
0.4048.5Zm.13460.1.S1_atAtcg00560--1e-2At5g64860DPE1 (DISPROPORTIONATING ENZYME)O.I.H.G.S.X.
0.3945.6Zm.6648.1.S1_atAtcg00560hypothetical protein LOC100272455-7e+0At5g64900PROPEP1O.I.H.G.S.X.
0.3742.3Zm.18500.1.A1_atAtcg00560hypothetical protein LOC100274833-1e+0At5g64667IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2)O.I.H.G.S.X.
0.3437.2Zm.7134.1.S1_atAtcg00560hypothetical protein LOC100272801 /// trans-cinnamate 4-monooxygenase-1e-18At2g30490C4H (CINNAMATE-4-HYDROXYLASE)O.I.H.G.S.X.
0.3336.0Zm.10839.1.S1_atAtcg00560--4e+0At5g08290YLS8O.I.H.G.S.X.
0.3233.4ZmAffx.199.1.A1_atAtcg00560--7e-1At1g14687AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)O.I.H.G.S.X.
0.3233.4Zm.7081.2.S1_a_atAtcg00560hypothetical protein LOC100193634 /// 60S ribosomal protein L24 /// 60S ribosomal protein L24 /// ribosomal protein L32 homolog32-3e-45At3g53020STV1 (SHORT VALVE1)O.I.H.G.S.X.
0.3131.6Zm.5339.1.A1_x_atAtcg00560cation cation antiporter-1e-5At1g54110cation exchanger, putative (CAX10)O.I.H.G.S.X.
0.3029.8Zm.18994.2.S1_atAtcg00560--1e+1At5g03495nucleotide bindingO.I.H.G.S.X.
0.2928.1Zm.5860.4.S1_atAtcg00560--3e+0At4g19910Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.2419.8Zm.6731.1.A1_atAtcg00560hypothetical protein LOC100279494-1e-14At1g50670OTU-like cysteine protease family proteinO.I.H.G.S.X.
0.2216.9Zm.12253.1.A1_atAtcg00560--2e+1At5g55565-O.I.H.G.S.X.
0.2115.5Zm.1109.1.A1_atAtcg00560PH domain containing protein-7e-5At2g30880pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.1912.8Zm.3900.1.S1_atAtcg00560--9e-56At2g07690minichromosome maintenance family protein / MCM family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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