CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0678200

Gene name
Homology with Arabidopsis Similar to At3g49601: - (HF=5e-1)

Module size 6 genes

NF 0.16

%ile 13.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 0.94 Os04g0678200 AK106193.1 - Protein of unknown function DUF1218 family protein 5e-1 At3g49601 - O.I. H.G. S.X.
0.40 51.1 0.93 Os05g0164800 AK103730.1 - Zinc transporter 6, chloroplast precursor(ZRT/IRT-like protein 6) 7e-1 At1g65420 unknown protein O.I. H.G. S.X.
0.40 51.1 0.94 Os05g0564800 AK120640.1 - Conserved hypothetical protein 1e-3 At1g17080 unknown protein O.I. H.G. S.X.
0.27 27.5 0.93 Os12g0636200 AK070465.1 - Homothorax 3e-11 At1g19700 BEL10 (BEL1-LIKE HOMEODOMAIN 10) O.I. H.G. S.X.
0.08 4.2 0.94 Os01g0754500 AK106976.1 - Protein of unknown function DUF1421 family protein 8e-2 At4g28300 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.08 4.2 0.93 Os10g0563000 AK072479.1 - Palmitoyl protein thioesterase family protein 1e-2 At3g60340 palmitoyl protein thioesterase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
82.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.9 98.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.8 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.118 1 GO:0006829 The directed movement of zinc (Zn) ions into, out of, within or between cells.
0.034 1 GO:0006464 The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
0.028 1 GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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