CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0677000

Gene name
Homology with Arabidopsis Similar to At4g16240: unknown protein (HF=3e+0)

Module size 17 genes

NF 0.24

%ile 22.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.89 96.9 0.96 Os04g0677000 AK122185.1 - Conserved hypothetical protein 3e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.45 58.8 0.97 Os04g0218600 AK103472.1 - Galactose-binding like domain containing protein 4e-1 At1g44085 glycine-rich protein O.I. H.G. S.X.
0.44 58.1 0.97 Os02g0156500 AK059616.1 - Conserved hypothetical protein 2e-1 At3g27090 - O.I. H.G. S.X.
0.38 46.9 0.96 Os08g0367400 AK070708.1 - Hypothetical protein 3e-1 At4g14620 unknown protein O.I. H.G. S.X.
0.35 41.7 0.97 Os05g0415200 AF439787.2 - Phytochelatin synthase 2e-1 At1g03980 ATPCS2 (phytochelatin synthase 2) O.I. H.G. S.X.
0.34 40.0 0.97 Os06g0173000 9634.m00695 - Hypothetical protein 2e+0 At2g30940 protein kinase family protein O.I. H.G. S.X.
0.28 31.1 0.98 Os03g0388000 AK062658.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 1e-1 At3g02065 DEAD/DEAH box helicase family protein O.I. H.G. S.X.
0.23 21.2 0.98 Os12g0443800 AK102599.1 - Hypothetical protein 5e-31 At3g27120 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding O.I. H.G. S.X.
0.21 17.9 0.98 Os07g0239600 AK103504.1 - Protein prenyltransferase domain containingprotein 2e-6 At5g05580 FAD8 (FATTY ACID DESATURASE 8) O.I. H.G. S.X.
0.19 15.1 0.97 Os07g0273700 9635.m01732 - Transcriptional factor B3 family protein 5e-1 At1g01030 NGA3 (NGATHA3) O.I. H.G. S.X.
0.17 12.6 0.97 Os01g0685200 NM_192084.1 - Conserved hypothetical protein 9e-21 At5g38110 ASF1B (ANTI- SILENCING FUNCTION 1B) O.I. H.G. S.X.
0.16 11.3 0.98 Os10g0442700 AK066106.1 - - 5e-4 At5g03320 protein kinase, putative O.I. H.G. S.X.
0.14 9.3 0.97 Os10g0487600 AK061153.1 - Conserved hypothetical protein 3e+0 At5g56710 60S ribosomal protein L31 (RPL31C) O.I. H.G. S.X.
0.13 8.2 0.96 Os12g0621300 AK101072.1 - SWIM Zn-finger domain containing protein 1e+0 At2g31957 LCR75 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 75) O.I. H.G. S.X.
0.13 8.2 0.98 Os12g0128800 AK119404.1 - Arabinoxylan arabinofuranohydrolase isoenzymeAXAH-I 1e-10 At3g10740 ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1) O.I. H.G. S.X.
0.12 7.2 0.97 Os09g0479500 AK121624.1 - Disease resistance protein family protein 5e-1 At1g03890 cupin family protein O.I. H.G. S.X.
0.12 7.2 0.98 Os02g0155300 AK067517.1 - Conserved hypothetical protein 4e-1 At3g03180 Got1-like family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.6 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.6 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.014 1 GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
0.012 1 GO:0006915 A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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