CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0675400

Gene name
Homology with Arabidopsis Similar to At2g28710: zinc finger (C2H2 type) family protein (HF=9e-1)

Module size 6 genes

NF 0.59

%ile 80.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.89 Os04g0675400 AK068186.1 - Heat shock protein DnaJ family protein 9e-1 At2g28710 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.67 87.2 0.92 Os08g0425200 AK099569.1 - Conserved hypothetical protein 1e-1 At4g11870 unknown protein O.I. H.G. S.X.
0.61 81.2 0.91 Os02g0774100 9630.m05279 - Thioredoxin-related domain containing protein 4e-3 At5g06690 WCRKC1 (WCRKC THIOREDOXIN 1) O.I. H.G. S.X.
0.43 55.4 0.92 Os07g0489800 AK068191.1 - Ferredoxin domain containing protein 5e-1 At3g16250 NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) O.I. H.G. S.X.
0.40 51.1 0.91 Os02g0773500 AK062694.1 - Conserved hypothetical protein 1e-3 At5g56950 NAP1 O.I. H.G. S.X.
0.36 44.0 0.92 Os01g0272800 NM_188072.1 - Conserved hypothetical protein 6e-1 At3g58710 WRKY69 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.6 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.4 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.7 99.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.2 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.9 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.024 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage