Co-expression analysis

Gene ID Os04g0675000
Gene name
Homology with ArabidopsisSimilar to At4g26470: calcium ion binding (HF=7e+0)
Module size 14 genes
NF 0.40
%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.82Os04g0675000AK110650.1-Protein of unknown function DUF789 family protein7e+0At4g26470calcium ion bindingO.I.H.G.S.X.
0.5573.70.91Os12g0120500AK103389.1-Protein of unknown function DUF567 family protein3e-2At5g18540unknown proteinO.I.H.G.S.X.
0.5573.70.91Os10g01226009638.m00247-Cellular retinaldehyde-binding/triple function,N-terminal domain containing protein1e-18At4g36490SFH12 (SEC14-LIKE 12)O.I.H.G.S.X.
0.5371.30.86Os11g05520009639.m03148-Tyrosine aminotransferase2e-3At5g36160aminotransferase-relatedO.I.H.G.S.X.
0.5068.00.92Os01g0533900AK101194.1-Multidrug resistance protein 1 homolog4e-4At4g18050PGP9 (P-GLYCOPROTEIN 9)O.I.H.G.S.X.
0.4355.40.91Os02g0767400AK072314.1-Curculin-like (mannose-binding) lectin domaincontaining protein4e-7At5g35370ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingO.I.H.G.S.X.
0.4355.40.91Os07g01044009635.m00042-Haem peroxidase, plant/fungal/bacterial familyprotein2e-3At5g40150peroxidase, putativeO.I.H.G.S.X.
0.3541.70.87Os01g0765400AK106246.1-Proteinase inhibitor I4, serpin family protein3e+0At1g70895CLE17 (CLAVATA3/ESR-RELATED 17)O.I.H.G.S.X.
0.3541.70.89Os04g0552200AF261273.1-Beta-expansin 52e+0At5g48660-O.I.H.G.S.X.
0.3338.80.92Os12g0640700AK108649.1-N/apple PAN domain containing protein8e-1At5g44500small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putativeO.I.H.G.S.X.
0.3134.50.91Os05g03390009633.m02481-VHS domain containing protein6e-2At5g46030unknown proteinO.I.H.G.S.X.
0.3032.70.88Os04g03817009632.m02976--2e-4At3g18540unknown proteinO.I.H.G.S.X.
0.2117.90.90Os01g0734000AY341845.1-WRKY DNA binding protein7e-13At2g46130WRKY43O.I.H.G.S.X.
0.1915.10.87Os01g0847300AK071164.1--6e+0At5g05860UGT76C2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.699.3GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.798.2GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.698.2GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.198.2GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.198.2GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.998.1GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.698.1GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.098.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.597.9GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0131GO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage