CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0672300

Gene name
Homology with Arabidopsis Similar to At5g48290: heavy-metal-associated domain-containing protein (HF=5e-1)

Module size 6 genes

NF 0.30

%ile 31.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.83 Os04g0672300 AK101246.1 - Conserved hypothetical protein 5e-1 At5g48290 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.43 55.4 0.82 Os03g0818200 AK058641.1 - Conserved hypothetical protein 5e-14 At5g58490 cinnamoyl-CoA reductase family O.I. H.G. S.X.
0.36 44.0 0.84 Os08g0225000 9636.m01262 - Beta-hydroxyacyl-ACP dehydratase precursor (Fattyacid synthesis protein) 2e-17 At2g22230 beta-hydroxyacyl-ACP dehydratase, putative O.I. H.G. S.X.
0.35 41.7 0.84 Os01g0760900 AK107573.1 - - 2e+0 At1g18835 MIF3 (MINI ZINC FINGER) O.I. H.G. S.X.
0.32 36.3 0.82 Os06g0696500 9634.m04702 - Xyloglucan endo-transglycosylase precursor 7e-3 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative O.I. H.G. S.X.
0.09 4.9 0.84 Os08g0483900 AK107626.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 3e-12 At1g72210 basic helix-loop-helix (bHLH) family protein (bHLH096) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.8 98.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.7 98.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.9 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.7 97.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.3 96.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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