CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0660600

Gene name
Homology with Arabidopsis Similar to At5g55290: ATP synthase subunit H family protein (HF=3e-10)

Module size 9 genes

NF 0.68

%ile 91.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.58 77.0 0.97 Os04g0660600 AK120899.1 - ATP synthase subunit H family protein 3e-10 At5g55290 ATP synthase subunit H family protein O.I. H.G. S.X.
0.84 96.0 0.98 Os11g0169900 U27098.1 - Vacuolar ATP synthase 16 kDa proteolipid subunit(EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)(Fragment) 4e-63 At1g75630 AVA-P4 O.I. H.G. S.X.
0.78 93.4 0.97 Os05g0593100 AK061855.1 - Vacuolar ATP synthase subunit C (EC 3.6.3.14)(V-ATPase C subunit) (Vacuolar proton pump C subunit) 2e-10 At1g12840 DET3 (DE-ETIOLATED 3) O.I. H.G. S.X.
0.71 89.6 0.97 Os01g0610100 AK059810.1 - Vacuolar ATP synthase 21 kDa proteolipid subunit(EC 3.6.3.14) (23-kDa subunit of V-ATPase) 4e-23 At2g25610 H+-transporting two-sector ATPase, C subunit family protein O.I. H.G. S.X.
0.63 82.7 0.98 Os01g0587000 AK067605.1 - Vacuolar ATP synthase subunit d (EC 3.6.3.14)(V-ATPase d subunit) (Vacuolar proton pump d subunit)(V-ATPase 41 KDa accessory protein) (DVA41) 2e-75 At3g28710 H+-transporting two-sector ATPase, putative O.I. H.G. S.X.
0.61 81.2 0.97 Os12g0168900 AK071641.1 - - 4e-51 At4g38920 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) O.I. H.G. S.X.
0.60 79.7 0.98 Os06g0662000 AK071775.1 - Vacuolar ATP synthase catalytic subunit A (EC3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pumpalpha subunit) (V-ATPase 69 kDa subunit) 0 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) O.I. H.G. S.X.
0.56 76.3 0.97 Os11g0127700 AK103742.1 - Hypothetical protein 2e-1 At1g49480 RTV1 (related to vernalization1 1) O.I. H.G. S.X.
0.56 76.3 0.97 Os02g0586400 L35845.1 - Small GTP binding protein Rab2 7e-87 At4g17170 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.4 98.1 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
10.2 98.0 GSM154832 Root_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
9.8 98.0 GSM154831 Root_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
8.5 97.7 GSM154944 Root_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
8.4 97.7 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
8.1 97.7 GSM154942 Root_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
7.3 97.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.3 97.5 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
7.2 97.4 GSM278850 KT95-418-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
6.4 97.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 2 GO:0006818 The directed movement of hydrogen (H2 or H+), into, out of, within or between cells.
0.057 1 GO:0015992 The directed movement of protons (hydrogen ions) into, out of, within or between cells.
0.051 1 GO:0015986 The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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