CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0650900

Gene name
Homology with Arabidopsis Similar to At5g13690: alpha-N-acetylglucosaminidase family / NAGLU family (HF=3e-14)

Module size 7 genes

NF 0.54

%ile 72.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.91 Os04g0650900 AK064480.1 - Alpha-N-acetylglucosaminidase 3e-14 At5g13690 alpha-N-acetylglucosaminidase family / NAGLU family O.I. H.G. S.X.
0.77 93.1 0.91 Os08g0417100 CR283653 - Isopenicillin N synthase family protein 4e+0 At5g43850 ARD4 O.I. H.G. S.X.
0.67 87.2 0.91 Os04g0415000 AK108662.1 - Conserved hypothetical protein 1e-1 At5g41761 unknown protein O.I. H.G. S.X.
0.57 77.0 0.91 Os12g0639600 AK122084.1 - Soluble quinoprotein glucose dehydrogenase domaincontaining protein 2e-8 At1g74790 catalytic O.I. H.G. S.X.
0.50 68.0 0.93 Os04g0311400 AK121305.1 - Cysteine proteinase 1 precursor (EC 3.4.22.-) 3e-13 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) O.I. H.G. S.X.
0.43 55.4 0.92 Os09g0249000 AK072805.1 - - 6e-1 At1g11220 unknown protein O.I. H.G. S.X.
0.33 38.8 0.92 Os09g0293400 AK059627.1 - Ubiquitin-conjugating enzyme E2 1e-10 At5g56150 UBC30 (ubiquitin-conjugating enzyme 30) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
50.3 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
49.9 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.8 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.045 1 GO:0016579 The removal of one or more ubiquitin moieties from a protein.
0.034 1 GO:0006464 The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
0.020 1 GO:0006278 The process whereby new strands of DNA are synthesized, using RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strands.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage