CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0650700

Gene name
Homology with Arabidopsis Similar to At3g16150: L-asparaginase, putative / L-asparagine amidohydrolase, putative (HF=1e-1)

Module size 6 genes

NF 0.19

%ile 17.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.82 Os04g0650700 AK058733.1 - L-asparaginase (L-asparagine amidohydrolase) 1e-1 At3g16150 L-asparaginase, putative / L-asparagine amidohydrolase, putative O.I. H.G. S.X.
0.40 51.1 0.86 Os03g0610800 AK107194.1 - Serpin 3e+0 At1g72416 heat shock protein binding O.I. H.G. S.X.
0.35 41.7 0.81 Os07g0654400 9635.m04629 - BLE2 protein 1e-1 At2g34150 WAVE1 O.I. H.G. S.X.
0.19 15.1 0.83 Os06g0494400 AK067594.1 - Multi antimicrobial extrusion protein MatE familyprotein 1e-3 At5g52450 MATE efflux protein-related O.I. H.G. S.X.
0.11 6.5 0.83 Os06g0120200 AK066196.1 - Protein of unknown function DUF594 family protein 3e-1 At1g74560 NRP1 (NAP1-RELATED PROTEIN 1) O.I. H.G. S.X.
0.09 4.9 0.83 Os12g0438300 AK067669.1 - Disease resistance protein family protein 3e+0 At3g60090 VQ motif-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	68.0	0.81	Os05g0142000	AK071647.1	-	Conserved hypothetical protein	3e-1	At1g35830	VQ motif-containing protein	O.I.	H.G.	S.X.
0.50	68.0	0.84	Os02g0504000	AK120677.1	-	Cytochrome P450 family protein	4e+0	At4g30097	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.84	Os10g0136500	AK120072.1	-	Protein kinase domain containing protein	2e-2	At1g11280	S-locus protein kinase, putative	O.I.	H.G.	S.X.
0.43	55.4	0.80	Os05g0409500	9633.m03132	-	MtN21 protein	1e-8	At5g07050	-	O.I.	H.G.	S.X.
0.40	51.1	0.87	Os01g0227500	AK120914.1	-	Cytochrome P450 family protein	2e-1	At4g33960	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.81	Os07g0167700	AK099436.1	-	Conserved hypothetical protein	5e+0	At5g15690	-	O.I.	H.G.	S.X.
0.27	27.5	0.83	Os04g0632100	AF403127.1	-	-	9e-8	At4g21370	S-locus protein kinase, putative	O.I.	H.G.	S.X.
0.25	24.1	0.85	Os02g0570500	AK107418.1	-	Cytochrome P450 family protein	2e-4	At3g20130	CYP705A22	O.I.	H.G.	S.X.
0.23	21.2	0.77	Os12g0222300	AK107929.1	-	Hypothetical protein	2e+1	At5g02600	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.22	19.4	0.75	Os04g0542000	AK106878.1	-	Protein of unknown function DUF584 family protein	9e-1	At4g30170	peroxidase, putative	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.2 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
29.5 99.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.200 1 GO:0006516 The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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